Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00534 ATGTTCAACCCTCAAACTTCGCCACCGCCGCCGCCGCTGCCGCTCATGACTCCGCCGGCAACCCCTCTCAACCAAGAAACGACGTCGTACAAGAAAAATCGCAGAACCAGCGGAGTTCCCGTTCCCCTTCCTCACTCAGTGGAAGTGATCGACGTTGACGATTTCATTCCCTCCGCCTTTTTCCAAGGCACGATCAGGTCAAACGCGGTCTCCGTTGAGCGACACGACGCCGTTTTCAAATCTGTCCACATCATCGACCTTTCCGACACCGAGGACGACGATGATTTACGTATCCTCAATTTCACTCCCGCGAACACCTCCTTTGGCAAACGGAAAAAGTTGAGGGGAGAATCCTCCAGCGCAGCCCCCTTCGACTGCGAAATCTGCGCTGAAACCAAAACCTCCAAGGAAGCCTTCTCCATCAACGGCTGCTGCCACGTGTACTGCAACCACTGCATCGCGCTCTATGTCGAATCCAAGCTCCAGGACAACGTCGTCAACATAGGCTGCCCTGTGCCGCAGTGCAGGGGATTACTGGAAGCCGAGGATTGCCGTTCGATTCTCGCCCCTGAGGTTTTTGATCGGTGGGGTACAGCGCTGTGTGAGGCGGTGATTTCTCTGGAGGAGAAGTTCTACTGTCCTTTTCCGGATTGCTCTGTGTTGTTGATTCGCGAGGGGAAAGATGAGGATATCAGAGAATCGAATTGTCCTAACTGTAGGAGGCAGTTTTGTGCGCTGTGTAGGGTACCCTGGCACGAGGACCTACCCTGTGAGGAATTTCAGAAACTGAACGCCGATGAGCGGGGAAGAGAGGATGTGATGCTGAGGAACCTTGCCAAGCAAATGATGTGGAAGAGGTGTCCCAATTGTGGGTTTTACGTCGCAAAAACCTCTGGCTGCATGTACATGAAATGCAGGTGTGGGAGTGCCTTCTGTTACAACTGTGGGGTTCCTAACACATCTAACCACCATTATTGCTCCTCCTGTAGAAAATAA 996 0.5281 MFNPQTSPPPPPLPLMTPPATPLNQETTSYKKNRRTSGVPVPLPHSVEVIDVDDFIPSAFFQGTIRSNAVSVERHDAVFKSVHIIDLSDTEDDDDLRILNFTPANTSFGKRKKLRGESSSAAPFDCEICAETKTSKEAFSINGCCHVYCNHCIALYVESKLQDNVVNIGCPVPQCRGLLEAEDCRSILAPEVFDRWGTALCEAVISLEEKFYCPFPDCSVLLIREGKDEDIRESNCPNCRRQFCALCRVPWHEDLPCEEFQKLNADERGREDVMLRNLAKQMMWKRCPNCGFYVAKTSGCMYMKCRCGSAFCYNCGVPNTSNHHYCSSCRK 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00534 331 CDD BRcat_RBR_unk 209 260 - -
Viun9g00534 331 Gene3D - 255 331 - -
Viun9g00534 331 SUPERFAMILY RING/U-box 123 203 - -
Viun9g00534 331 ProSitePatterns Zinc finger RING-type signature. 144 153 IPR017907 -
Viun9g00534 331 FunFam RBR-type E3 ubiquitin transferase 121 207 - -
Viun9g00534 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 208 IPR013083 -
Viun9g00534 331 Pfam IBR domain, a half RING-finger domain 275 329 IPR002867 GO:0008270
Viun9g00534 331 Pfam IBR domain, a half RING-finger domain 204 257 IPR002867 GO:0008270
Viun9g00534 331 MobiDBLite consensus disorder prediction 1 19 - -
Viun9g00534 331 FunFam RBR-type E3 ubiquitin transferase 259 331 - -
Viun9g00534 331 MobiDBLite consensus disorder prediction 20 35 - -
Viun9g00534 331 SUPERFAMILY RING/U-box 201 262 - -
Viun9g00534 331 ProSiteProfiles TRIAD supradomain profile. 122 331 IPR044066 -
Viun9g00534 331 CDD Rcat_RBR_unk 283 319 - -
Viun9g00534 331 SUPERFAMILY RING/U-box 268 327 - -
Viun9g00534 331 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 77 329 IPR031127 GO:0004842|GO:0016567
Viun9g00534 331 SMART ibrneu5 267 329 IPR002867 GO:0008270
Viun9g00534 331 SMART ibrneu5 194 257 IPR002867 GO:0008270
Viun9g00534 331 MobiDBLite consensus disorder prediction 1 38 - -
Viun9g00534 331 ProSiteProfiles Zinc finger RING-type profile. 126 174 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00534 Viun-Chr9 3932443 3934556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00534 126 318 C3H Transcription Factor Family AT2G19610 32.039 3.04e-23 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00534 K11975 - gmx:100803898 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00534 9 3932443 3934556 Viun9g00534 9 3932443 3934556 ECH