Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00515 ATGCTGCAACGGGCACGGGGAAGACTGCTGCATATCTCGCTCCGATTGTTCATCTCTTGCAGGGATACGAAAATCGGATTCAGCGCTCTGATGGAACATTTGGTTTATGAAATTCTTCAGAAGTTATTGCATCGATTTCATTGGATTGTTCCAGGATATGTTATGGGTGGAGAAAATAGATCAAAGGAGAAAGCCAGGCTGCGCAAAGGCATATCAATTCTTATAGCAACTCCTGGGCGTCTTCTGGATCACTTGAAGAACACAACATCATTCTTGCACTCAAGTCTGCGCTGGATAATTTTTGATGAAGCTGATCGGATTTTGGAATTAGGATTTGGAAAAGATATAGAGGAAATACTAGATCTTTTAGGCTCAAGGAAAACAGCGCATGATGACCAAAAGAATACAGTTCCAAGAAACTCTAAAATTCAAAGACAGAATTTGCTTTTATCTGCCACCTTAAACGAGAAAGTGAACCACCTTGCTAAAATTAGTCTAGACAATCCAGTGATGGTTGGTCTTGATGGTAAGAAAATAGAACAAATTTCAACAGCTGTAAGCAATGACCATTCAGAATCTGATGAAGATAATGAAGACCAGTATTCCAGTAAAATGCCAACAGTTGGAGATTACAAAGTTCCTGTACAGTTGATTCAGAGATACATGAAAGTGCCTTGCGGTTCACGACTACCTATACTTCTTTCAATTATAAAGCATCTCTTTGAAAGGGAACCTTCACAAAAGGTTGTTGTATTCTTTTCAACATGCGATGCAGTAGATTTTCACTATTCACTGTTAAGTGAATTTCAATTTTCATCCTATCCACAAACAGAAGGCACCCGACAGAAGTTTCTTGGATGCAAAATTTTTCAGTTACATGGTAGTATGGTGCAGGAGGACCGGAGAACCAGTTTTCAGACCTTTAAAACTGAGAAATCTGCTCTGCTTTTGTCTAGTGATGTTTCTGCTAGAGGCCTGGATTTTCCAAAGGTTAGATGCATCATACAATATGATTCTCCTGGAGAAGCTACAGAATATGTTCATAGGGTTGGTAGAACTGCCCGACTGGGTGAAAAGGGAGAGTCGTTGCTATTTCTGCAACCAGTTGAGATAGACTATTTACAGGACTTGGAAAAACATGGTGTGTCACTCACAGAGTATCCTGTCCTCAAAGTGTTGGATAGTTTTCCACTACAAAAGAACTACACAAAGAAGTCAGTGTTCTTAGATTCACATCCCTGGGTCCTTTCTCTCCAGAAGGCACTTGAAGCTTTCATCATGTCGAAGCCCGAGGTAGATAAACTTGCTAAGAAGGCATTTTGCTCTTGGGTTCGTGCATACACAGCCCATCGTGGTGAGTTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCACGTAGCAAAAAGCTTTGCATTGAAACAGCAACCCTCTTTAGTTGGACAGTCATTCCAGAAGCAAGCTAAGAAGAGAAAAATATTTGAGAGGAAAACTGGGGTGTCAAAAAAGAGAAAAGTTGGGAGTGTGACAGAACGCAGACCATGA 1548 0.4044 MLQRARGRLLHISLRLFISCRDTKIGFSALMEHLVYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILIATPGRLLDHLKNTTSFLHSSLRWIIFDEADRILELGFGKDIEEILDLLGSRKTAHDDQKNTVPRNSKIQRQNLLLSATLNEKVNHLAKISLDNPVMVGLDGKKIEQISTAVSNDHSESDEDNEDQYSSKMPTVGDYKVPVQLIQRYMKVPCGSRLPILLSIIKHLFEREPSQKVVVFFSTCDAVDFHYSLLSEFQFSSYPQTEGTRQKFLGCKIFQLHGSMVQEDRRTSFQTFKTEKSALLLSSDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGEKGESLLFLQPVEIDYLQDLEKHGVSLTEYPVLKVLDSFPLQKNYTKKSVFLDSHPWVLSLQKALEAFIMSKPEVDKLAKKAFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQAKKRKIFERKTGVSKKRKVGSVTERRP 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00515 515 MobiDBLite consensus disorder prediction 496 515 - -
Viun9g00515 515 Pfam DEAD/DEAH box helicase 35 160 IPR011545 GO:0003676|GO:0005524
Viun9g00515 515 Pfam Helicase conserved C-terminal domain 235 357 IPR001650 -
Viun9g00515 515 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 172 IPR014001 -
Viun9g00515 515 PANTHER RNA HELICASE 35 483 - -
Viun9g00515 515 Gene3D - 29 175 IPR027417 -
Viun9g00515 515 CDD SF2_C_DEAD 217 366 - -
Viun9g00515 515 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 100 108 IPR000629 -
Viun9g00515 515 Gene3D - 228 506 IPR027417 -
Viun9g00515 515 SMART DUF4217_3 417 482 IPR025313 -
Viun9g00515 515 SMART helicmild6 275 357 IPR001650 -
Viun9g00515 515 SMART ultradead3 1 182 IPR014001 -
Viun9g00515 515 Pfam Domain of unknown function (DUF4217) 419 479 IPR025313 -
Viun9g00515 515 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 236 404 IPR001650 -
Viun9g00515 515 MobiDBLite consensus disorder prediction 185 205 - -
Viun9g00515 515 MobiDBLite consensus disorder prediction 501 515 - -
Viun9g00515 515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 378 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00515 Viun-Chr9 3756271 3763410 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00515 34 366 Eukaryotic Initiation Factors Gene Family AT5G11170 25.806 2.34e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00515 K14806 - gmx:100805157 858.981