Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00514 ATGGGGGTGAAGAAGCTTAGTCAGGGAGTGAAAAACGAGGGTAATGGCAGCAACGACAACGTTTTTGCTTCATGCTCCTTCTCCAGCCTTGGCCTTGATTCTAATTTGTGTGAACAGCTTCATGAGAGGTTGGGGTTTGAAGTTCCAACGCTGGTGCAAGCTCAAGCGATTCCTGTTATTCTCTCTGGGCGTCATGCATTGGTAAATGCTGCAACGGGCACGGGGAAGACTGCTGCATATCTCGCTCCGATTGTTCATCTCTTGCAGGGATACGAAAATCGGATTCAGCGCTCTGATGGAACATTTGCGTTGGTTCTTGTACCGACGCGTGAGCTATGTTTGCAGGTTTATGAAATTCTTCAGAAGTTATTGCATCGATTTCATTGGATTGTTCCAGGATATGTTATGGGTGGAGAAAATAGATCAAAGGAGAAAGCCAGGCTGCGCAAAGGCATATCAATTCTTATAGCAACTCCTGGGCGTCTTCTGGATCACTTGAAGAACACAACATCATTCTTGCACTCAAGTCTGCGCTGGATAATTTTTGATGAAGCTGATCGGATTTTGGAATTAGGATTTGGAAAAGATATAGAGGAAATACTAGATCTTTTAGGCTCAAGGAAAACAGCGCATGATGACCAAAAGAATACAGTTCCAAGAAACTCTAAAATTCAAAGACAGAATTTGCTTTTATCTGCCACCTTAAACGAGAAAGTGAACCACCTTGCTAAAATTAGTCTAGACAATCCAGTGATGGTTGGTCTTGATGGTAAGAAAATAGAACAAATTTCAACAGCTGTAAGCAATGACCATTCAGAATCTGATGAAGATAATGAAGACCAGTATTCCAGTAAAATGCCAACAGTTGGAGATTACAAAGTTCCTGTACAGTTGATTCAGAGATACATGAAAGTGCCTTGCGGTTCACGACTACCTATACTTCTTTCAATTATAAAGCATCTCTTTGAAAGGGAACCTTCACAAAAGGTTGTTGTATTCTTTTCAACATGCGATGCAGTAGATTTTCACTATTCACTGTTAAGTGAATTTCAATTTTCATCCTATCCACAAACAGAAGGCACCCGACAGAAGTTTCTTGGATGCAAAATTTTTCAGTTACATGGTAGTATGGTGCAGGAGGACCGGAGAACCAGTTTTCAGACCTTTAAAACTGAGAAATCTGCTCTGCTTTTGTCTAGTGATGTTTCTGCTAGAGGCCTGGATTTTCCAAAGGTTAGATGCATCATACAATATGATTCTCCTGGAGAAGCTACAGAATATGTTCATAGGGTTGGTAGAACTGCCCGACTGGGTGAAAAGGGAGAGTCGTTGCTATTTCTGCAACCAGTTGAGATAGACTATTTACAGGACTTGGAAAAACATGGTGTGTCACTCACAGAGTATCCTGTCCTCAAAGTGTTGGATAGTTTTCCACTACAAAAGAACTACACAAAGAAGTCAGTGTTCTTAGATTCACATCCCTGGGTCCTTTCTCTCCAGAAGGCACTTGAAGCTTTCATCATGTCGAAGCCCGAGGTAGATAAACTTGCTAAGAAGGCATTTTGCTCTTGGGTTCGTGCATACACAGCCCATCGTGGTGAGTTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCACGTAGCAAAAAGCTTTGCATTGAAACAGCAACCCTCTTTAGTTGGACAGTCATTCCAGAAGCAAGCTAAGAAGAGAAAAATATTTGAGAGGAAAACTGGGGTGTCAAAAAAGAGAAAAGTTGGGAGTGTGACAGAACGCAGACCATGA 1791 0.4154 MGVKKLSQGVKNEGNGSNDNVFASCSFSSLGLDSNLCEQLHERLGFEVPTLVQAQAIPVILSGRHALVNAATGTGKTAAYLAPIVHLLQGYENRIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILIATPGRLLDHLKNTTSFLHSSLRWIIFDEADRILELGFGKDIEEILDLLGSRKTAHDDQKNTVPRNSKIQRQNLLLSATLNEKVNHLAKISLDNPVMVGLDGKKIEQISTAVSNDHSESDEDNEDQYSSKMPTVGDYKVPVQLIQRYMKVPCGSRLPILLSIIKHLFEREPSQKVVVFFSTCDAVDFHYSLLSEFQFSSYPQTEGTRQKFLGCKIFQLHGSMVQEDRRTSFQTFKTEKSALLLSSDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGEKGESLLFLQPVEIDYLQDLEKHGVSLTEYPVLKVLDSFPLQKNYTKKSVFLDSHPWVLSLQKALEAFIMSKPEVDKLAKKAFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQAKKRKIFERKTGVSKKRKVGSVTERRP 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00514 596 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 54 IPR014014 GO:0003724
Viun9g00514 596 Pfam DEAD/DEAH box helicase 51 241 IPR011545 GO:0003676|GO:0005524
Viun9g00514 596 SMART ultradead3 45 263 IPR014001 -
Viun9g00514 596 PANTHER RNA HELICASE 24 525 - -
Viun9g00514 596 CDD SF2_C_DEAD 298 447 - -
Viun9g00514 596 Gene3D - 3 256 IPR027417 -
Viun9g00514 596 Gene3D - 309 586 IPR027417 -
Viun9g00514 596 SMART DUF4217_3 498 563 IPR025313 -
Viun9g00514 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 253 IPR027417 -
Viun9g00514 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 454 IPR027417 -
Viun9g00514 596 CDD DEADc_DDX31 36 254 - -
Viun9g00514 596 Pfam Domain of unknown function (DUF4217) 500 560 IPR025313 -
Viun9g00514 596 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 181 189 IPR000629 -
Viun9g00514 596 MobiDBLite consensus disorder prediction 266 286 - -
Viun9g00514 596 MobiDBLite consensus disorder prediction 582 596 - -
Viun9g00514 596 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 317 485 IPR001650 -
Viun9g00514 596 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 253 IPR014001 -
Viun9g00514 596 SMART helicmild6 356 438 IPR001650 -
Viun9g00514 596 MobiDBLite consensus disorder prediction 577 596 - -
Viun9g00514 596 Pfam Helicase conserved C-terminal domain 316 438 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00514 Viun-Chr9 3756271 3763428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00514 17 470 Eukaryotic Initiation Factors Gene Family AT3G19760 24.946 2.85e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00514 K14806 - gmx:100805157 1064.68