Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00513 ATGAAGGCTCCTCCAAATGGCTACTTGCCTAATTCCGGGGAAGGGGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCATGTGCTGGACCATTGGTTTCCTTACCTCCTGTTGGAAGTCTTGTGGTTTACTTTCCTCAAGGACACAGTGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCTGACTTCGTTCCTAGTTACCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCTCTTCACGCTGATCCTGAAACTGATGAGGTCTATGCACAGATGACCCTTCAACCTGTTACTAAATATGACAAGGAAGCAATATTGGCATCTGACATGGGTCTCAAACAAAACCAACAACCTACTGAGTTCTTTTGCAAAACTCTTACAGCTAGTGACACAAGCACTCATGGTGGATTCTCTGTGCCTCGCAGAGCTGCTGAGAAAATATTCCCACTTCTGGATTTTTCAATGCAACCTCCAGCTCAGGAGATTGTTGCCAAAGATTTGCATGACAGTACTTGGACATTTAGACATATTTATCGAGGACAACCAAAGAGGCATCTATTGACTACGGGTTGGAGTGTCTTTGTTAGCACAAAAAGGCTCTTTGCTGGAGATTCAGTTCTTTTTATCAGGGATGAAAAACAACAACTTCTTTTAGGTATTAAAAGAGCTAACAGACAGCAGCCAGCACTATCTTCATCAGTAATATCCAGTGACAGCATGCACATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTTCAAATAACAGCCCATTTACTATTTTCTATAATCCAAGGGCCAGCCCCGCTGAATTTGTAATTCCATTGGCCAAGTATAATAAAGCTCTCTACAATCAAGTTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACCGAGGAGTCAGGGGTGCGCAGACATATGGGTACAATCACTGGGATCAGTGACTTGGATCCTGTCAGATGGAAGAGTTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCAAGCAGAGTTTCAATTTGGGATATTGAACCAGTAGTGACTCCTTTCTACATTTGTCCTCCTCCATTTTTTAGGCCGAAGTTTCCCAAGCAGCCAGGAATGCCAGATGATGATTCTGATATAGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTTGGAGATGACATTGGAATGAAGGATGCCTCAAGTTCAATCTTCCCAGGTTTGAGTTTGGTGCAATGGATGAGCATGCAGCAGAATAATCAGTTCTCCGCTGCCCAATCTGGATTTATGCCCCCATCCATGCTTTCATCCAATACACTGCATGGTAACCTTCCCACTGATGATCCATCCAAATTATTGAACTTTCAAGCTCCTGTCCTCTCTGCACCAAATCTACAATTTAACAAACCTAACTTACCAAACCAAGTCAACCAATTGCAACAACCCCAAACATCATGGCCACCGCAGCAGCAACAACAGCAGAAGGTGCAGTCACTGATGCCAACAACCTTAAACCCGCTCCAACAGCAGCAACAGAGGCAACAACAGATGCCTGTACTGCAAAACCTGTCACAACCACAGCAACAACAGCCCCAAATGCCTCAACAGAGAGCACAACAGCCACAGCAACAGCAACAGCAGCCATGTCAACAGACCATCATGAATAATGGGGCAGTTTCTTCTAATCAGATTCCAAATCAGTGTGTGCAGCAACCAGTGACATACTCCCAGCTTCAGCAACAGCAATTACTCTCAGGAAATATGCCACCCCAACAAAGTTTTCAATCACCCAATAAGAATGCATTGCTGATGACATCCTTACCGCAAGAATCTCAGTTTCAACAGCAAATAGACCAGCAAGCTAGTCTCTTACAGAGGCAGCAGCAACAGACACAGTTGCAATCATCTCCGTTGCAGTTATTGCAACAAAGCATGTCACAGAGGGCACCACAGCAACCACAAATGACACAAATGTCACAGCAAAACAGCTCAGAGCAACAACCACAGTTGCAGTTGCTACAGAAATTGCAGCAGCAACAACAGCAGCAACAGCAACAACAGCAACAACAACAACTCCTTTCCACTTCTAGCCCACTTTTGCAGTCTCAGCTTCTACAGCAACAAAACCAGCAATTACCGCAGCTGCCTCTATCACAGTGTCATCAGCCTCAACAGCTTGGCAACAATGCTTTCTCAATGGAGAAGCTTTTCAATGGCAACAACTACTCTTCTTCGGCTTTGATGCAAACACAGCAGCTTCCTATGAACCAATCCCATAATACACAGAAATCATTAACTAATACTAGAGCTCCTTCAACACTTACAGATGGAGATGCCCCATCATGCTCAACTTCACCGTCTACTAATAATTGTCAGATATCTCCTTCAAATCTGATTAAAAGAAATCAACAGGTACCAACCCCATTAGGAGGACCTTCGGTAGTTGAACCAACCAATCATTTGATACAGGAGCTTCATAGAAAGTCTGAGATGCAGATCAAACACGAATTACCCGGTGTAAGAGGACCTGACCAGCTGAAGTGCAAAGGGACAATTGCAGATCAGATGGAAGCTTCTTCTGGAACATCTTACTCTATTGATCCTAATAATATCCACCAGAACTTCCAACTTCCCAGTTTCTGCATGGACGGTGATGTCCAATCACACCCAAGAAATAATCTTCCATTTGCCTCTAATCTTGATGGATTAACACCTGATACTTTGCTCTCAAGAGGGTATGATTCTCAAAAAGATCTTCAAAACTTGCTGTCCAATTATGGTGGTGCTCCAAGAGACATTGAAACCGAGCTGTCCACTGCTGCCATTAGTTCACAGCCATTTGGGGTGCCAGACATGCCTTTTAAGCCTGGATGCTCCAGTGACATTGCAATCAATGATCCTGGGGTTTTGAATAATGGCTTGTGGGCTAGTCAGACTCAAAGAATGAGAACATATACTAAGGTTCAAAAATGTGGCTCTGTTGGAAGATGCATTGATGTCACCCGTTACAAGGGATATGATGAACTCCGGCATGATTTGGCTAGGATGTTTGGAATTGAAGGGCAGCTAGAAGATCCTCAAAGGACAGAGTGGAAACTAGTCTACGTAGATCATGAAAACGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCTGAGGTACAGCAAATGAGCTTAGATGGAGATTTAGGACATGTTCCTGTCCCCAATCAAGCTTGTAGTGGGACAGATAATGGCAATGCATGGAGGGGACAGTATGATGATAACTCTGCAGCCTCGTTTAACCGATAA 3351 0.4417 MKAPPNGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFVPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVTKYDKEAILASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPLLDFSMQPPAQEIVAKDLHDSTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPAEFVIPLAKYNKALYNQVSLGMRFRMMFETEESGVRRHMGTITGISDLDPVRWKSSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPDDDSDIENAFKRAMPWLGDDIGMKDASSSIFPGLSLVQWMSMQQNNQFSAAQSGFMPPSMLSSNTLHGNLPTDDPSKLLNFQAPVLSAPNLQFNKPNLPNQVNQLQQPQTSWPPQQQQQQKVQSLMPTTLNPLQQQQQRQQQMPVLQNLSQPQQQQPQMPQQRAQQPQQQQQQPCQQTIMNNGAVSSNQIPNQCVQQPVTYSQLQQQQLLSGNMPPQQSFQSPNKNALLMTSLPQESQFQQQIDQQASLLQRQQQQTQLQSSPLQLLQQSMSQRAPQQPQMTQMSQQNSSEQQPQLQLLQKLQQQQQQQQQQQQQQQLLSTSSPLLQSQLLQQQNQQLPQLPLSQCHQPQQLGNNAFSMEKLFNGNNYSSSALMQTQQLPMNQSHNTQKSLTNTRAPSTLTDGDAPSCSTSPSTNNCQISPSNLIKRNQQVPTPLGGPSVVEPTNHLIQELHRKSEMQIKHELPGVRGPDQLKCKGTIADQMEASSGTSYSIDPNNIHQNFQLPSFCMDGDVQSHPRNNLPFASNLDGLTPDTLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTAAISSQPFGVPDMPFKPGCSSDIAINDPGVLNNGLWASQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGHVPVPNQACSGTDNGNAWRGQYDDNSAASFNR 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00513 1116 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Viun9g00513 1116 Gene3D - 984 1078 - -
Viun9g00513 1116 Gene3D - 289 360 - -
Viun9g00513 1116 MobiDBLite consensus disorder prediction 641 678 - -
Viun9g00513 1116 FunFam Auxin response factor 124 228 - -
Viun9g00513 1116 Gene3D - 123 227 IPR015300 -
Viun9g00513 1116 SUPERFAMILY CAD & PB1 domains 1003 1067 - -
Viun9g00513 1116 Coils Coil 675 699 - -
Viun9g00513 1116 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 1078 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun9g00513 1116 CDD B3_DNA 125 217 IPR003340 GO:0003677
Viun9g00513 1116 MobiDBLite consensus disorder prediction 762 802 - -
Viun9g00513 1116 MobiDBLite consensus disorder prediction 1094 1116 - -
Viun9g00513 1116 FunFam Auxin response factor 289 361 - -
Viun9g00513 1116 FunFam Auxin response factor 984 1078 - -
Viun9g00513 1116 MobiDBLite consensus disorder prediction 470 556 - -
Viun9g00513 1116 ProSiteProfiles PB1 domain profile. 989 1082 IPR000270 GO:0005515
Viun9g00513 1116 SMART B3_2 126 228 IPR003340 GO:0003677
Viun9g00513 1116 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun9g00513 1116 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Viun9g00513 1116 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Viun9g00513 1116 Pfam AUX/IAA family 987 1075 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00513 Viun-Chr9 3711496 3719211 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00513 1 489 B3 DNA Binding Superfamily AT1G19220 82.618 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun9g00513 AUX_IAA 3.1e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00513 K14486 - gmx:100804628 1024.62