Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun9g00510 | ATGGTGAAGCCTGGTGGCGTGGAAAAAGCTACGGAGGAGCGAACCAATACGTCGTACAGGGGAGTACGGAAGAGGAAGTGGGGAAAATACGTGTCGGAAATTAGGCTTCCCAACAGCCGTCAAAGGATTTGGTTGGGTTCCTACGACAGCGCCGAGAAGGCGGCGCGCGCTTTCGACGCGGCCATGTTCTGCTTACGTGGCAGCGGCGCCAAATTTAACTTCCCGAATGACCCGCCCAACATCGCCGGGGGGAGGACCATGACCCGCCCTCAGATTCAGATAGCCGCGGCTCGTTTCGCCAATTCGGAGCCCCAGAAAGAGTGTTCGGGTCAGCAACACGTGGAGTCTTTAGCTTCGGACGAGGAAACGGCGTCGTTCAGGTTGGAGTCGTCGTCGTCTCCTCCTCTCTCCGACGTGTCGGTTCAGAACGACCCCATATTCCAAAACGGGTCATTTCCCGATCCGTTTTCGGATCTCGGGTCGAGCAGTTTCGCCCCCGAGTTCTCCGATTTTCCGTGTTATGACGATTTCAGCCGCGATTTCTTCATGCCGGGGCTTCCGAGTTTCGATGACGGAGAAGAGAACGTGGACGGGATGATAGTTCAGGGCCCGTTGTGGAACTTCTAA | 627 | 0.5646 | MVKPGGVEKATEERTNTSYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGSGAKFNFPNDPPNIAGGRTMTRPQIQIAAARFANSEPQKECSGQQHVESLASDEETASFRLESSSSPPLSDVSVQNDPIFQNGSFPDPFSDLGSSSFAPEFSDFPCYDDFSRDFFMPGLPSFDDGEENVDGMIVQGPLWNF | 208 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun9g00510 | 208 | SUPERFAMILY | DNA-binding domain | 18 | 76 | IPR016177 | GO:0003677 | |
Viun9g00510 | 208 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Viun9g00510 | 208 | ProSiteProfiles | AP2/ERF domain profile. | 18 | 75 | IPR001471 | GO:0003700|GO:0006355 | |
Viun9g00510 | 208 | FunFam | Ethylene-responsive transcription factor 2 | 17 | 76 | - | - | |
Viun9g00510 | 208 | SMART | rav1_2 | 18 | 81 | IPR001471 | GO:0003700|GO:0006355 | |
Viun9g00510 | 208 | Gene3D | AP2/ERF domain | 18 | 76 | IPR036955 | GO:0003700|GO:0006355 | |
Viun9g00510 | 208 | Pfam | AP2 domain | 18 | 67 | IPR001471 | GO:0003700|GO:0006355 | |
Viun9g00510 | 208 | CDD | AP2 | 19 | 77 | IPR001471 | GO:0003700|GO:0006355 | |
Viun9g00510 | 208 | PRINTS | Ethylene responsive element binding protein signature | 41 | 57 | IPR001471 | GO:0003700|GO:0006355 | |
Viun9g00510 | 208 | PRINTS | Ethylene responsive element binding protein signature | 19 | 30 | IPR001471 | GO:0003700|GO:0006355 | |
Viun9g00510 | 208 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 13 | 129 | - | - | |
Viun9g00510 | 208 | MobiDBLite | consensus disorder prediction | 119 | 144 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun9g00510 | Viun-Chr9 | 3683176 | 3684221 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun9g00510 | 17 | 208 | AP2-EREBP Transcription Factor Family | AT1G19210 | 46.269 | 5.59e-50 | 159 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Viun9g00510 | AP2 | 2.2e-12 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun9g00510 | - | - | gmx:100802508 | 300.441 |