Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00503 ATGGCCGCTGTTCGCCTCCACCACCACCACTACCACCACTTCCTCCTCCTCTTCTTCCACCTCTTCTTCGCTCTCTCTTCTTCAACCGAAACCGAATCCCTCCTCCGTCTCAAGCAGTCCCTTGTCAACGCCGATCGCTCTCTCTCCTCATGGATCCCCAACGTCTCGCCTTGCTCCGGCACCTGGCTAGGCGTTGTCTGCTTCAACGGAGTCATAACGGGCCTTCACCTCTCCGACTTGGGCCTCTCGGGACCAATCGACGTCGACGCCCTGGCGGAGATTCGCGGCCTCAGAACCCTCAGCTTCATCAACAACTCCTTCTCGGGGCCAATCCCGGAGTTCAACAAACTGGGCTCAATCAAGTCCCTCCTTTTAACCCAAAATCGTTTCTCCGGGACAATCCCAAACGACTTTTTCGCCCCGTTGAACTCCCTCAAGAAACTCTGGCTCTCCGGCAACCGCTTCTCCGGCAGCATCCCGCAATCCCTGACCCGGCTCGACCTCCTCAAAGAGCTCCACCTCGAGTACAACTCCTTCGCAGGCTTAATCCCCAACTTCCGCCAACAGCTAAGATCGCTGGACCTCTCCTTCAACAAACTGGAAGGGCCCATTCCCGAGAATCTGGCGACGTTCACCGTGGACTCTTTCGTAGGAAACGACGCTCTGTGCGGGAAGCCGTTGGTGAAGGTGTGCGAGGCTTCCAACACGTCGTACTCGGTGGCGAGCAACGTGGGAGACGAGGAGTACGGGAACGGGTGGGGGAGGAAGGTGATCGTGGTGCTGATGGTGGCGTCGTTGGCGGCGTTGTTGTTTCTGTTTTTGACGCGGAAGCGGCGGGTGGAGTTCACGCCGGTGAGCAGGAGCAGCAGCGCGGAGGAGGCGGTGGAGGTGCAGGTGCCGAGCTCGAGGGGGAGCGTGAGTGACAGGAGGGAGAACAAGAGGGGGGACATCGTGATGGTGAACGAGATGAGGGGGGTGTTTGGGCTGCAGGACATGATGAAGGCGGCGGCGGAGGTGCTGGGGAACGGTGGGCTGGGGTCGGCGTACAAGGCGGCGATGGCGAGCGGGCTGTGCGTGGTGGTGAAGAGGATGAGGGAGATGAATAAGATAGGGAAGGAGGTGTTCGACGCCGAGATGAGACAGTTCGGCAGGATCCGACACCGTAACATCATCACTCCCCTCGCTTACCACTACCGTAGGGAGGAGAAGCTCCTCATCACCGAGTACATGCCCAAAGGAAGCTTGTTCTACGTCTTGCATGGTGATAGAGGTCTATCCCATTCTGAATTGACATGGCCCATTCGTTTGAAGATTGTGAAGGGAATTGCAAGAGGGTTGGGCTTTCTTTACACCGAGTTTTCCACCTACGACTTGCCTCACGGCAACCTTAAATCTTGCAATGTCCTCCTAAGTGATGACTACGAGCCTCTTTTGAGTGACTATGCCTTTCAGCCACTGGTGAACCCGAATGTTGCAGTGCAGGCATTGTTTGCCTTCAAAACCCCAGACTTTGTGCAGAACCAGAAAGTTTCACAGAAGACCGATGTTTACTGCCTCGGAATCATCATTCTGGAAGTGATCGCTGGAAAGTTCCCTGCTCAGTATCACAGCAATGGGAAGGGTGGGACTGATGTTGTGCAATGGGCACATTCTGCAGTTTCGGAGGGAACAGAAGCAGAGATGATCGATCCAGAGTTGTCGTCAAACGACACAAACTCACGCAATCAGATGGTGAAACTTCTCCGAATTGGGGTTGCTTGCACCGAGAATGATCCTGATCAAAGACCAAAGATGAAGGAAGCTATTAGAAGGATAGAGGAGGTACAGGTTTAA 1833 0.5521 MAAVRLHHHHYHHFLLLFFHLFFALSSSTETESLLRLKQSLVNADRSLSSWIPNVSPCSGTWLGVVCFNGVITGLHLSDLGLSGPIDVDALAEIRGLRTLSFINNSFSGPIPEFNKLGSIKSLLLTQNRFSGTIPNDFFAPLNSLKKLWLSGNRFSGSIPQSLTRLDLLKELHLEYNSFAGLIPNFRQQLRSLDLSFNKLEGPIPENLATFTVDSFVGNDALCGKPLVKVCEASNTSYSVASNVGDEEYGNGWGRKVIVVLMVASLAALLFLFLTRKRRVEFTPVSRSSSAEEAVEVQVPSSRGSVSDRRENKRGDIVMVNEMRGVFGLQDMMKAAAEVLGNGGLGSAYKAAMASGLCVVVKRMREMNKIGKEVFDAEMRQFGRIRHRNIITPLAYHYRREEKLLITEYMPKGSLFYVLHGDRGLSHSELTWPIRLKIVKGIARGLGFLYTEFSTYDLPHGNLKSCNVLLSDDYEPLLSDYAFQPLVNPNVAVQALFAFKTPDFVQNQKVSQKTDVYCLGIIILEVIAGKFPAQYHSNGKGGTDVVQWAHSAVSEGTEAEMIDPELSSNDTNSRNQMVKLLRIGVACTENDPDQRPKMKEAIRRIEEVQV 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00503 610 Gene3D Phosphorylase Kinase; domain 1 302 409 - -
Viun9g00503 610 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 17 609 IPR046959 -
Viun9g00503 610 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Viun9g00503 610 Pfam Protein kinase domain 338 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00503 610 Pfam Leucine rich repeat 120 178 IPR001611 GO:0005515
Viun9g00503 610 Pfam Leucine Rich Repeat 189 208 IPR001611 GO:0005515
Viun9g00503 610 Gene3D Ribonuclease Inhibitor 188 235 IPR032675 -
Viun9g00503 610 ProSiteProfiles Protein kinase domain profile. 334 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00503 610 Gene3D Ribonuclease Inhibitor 27 187 IPR032675 -
Viun9g00503 610 SUPERFAMILY Protein kinase-like (PK-like) 338 605 IPR011009 -
Viun9g00503 610 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 88 183 - -
Viun9g00503 610 Gene3D Transferase(Phosphotransferase) domain 1 410 610 - -
Viun9g00503 610 SUPERFAMILY L domain-like 31 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00503 Viun-Chr9 3566921 3569271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00503 14 610 Receptor kinase-like Gene Family AT3G42880 50.469 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Viun9g00503 Pkinase 3.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00503 - - gmx:100790660 879.396