Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00493 ATGGCACGTGAGTTCAACGATGTTGCAGCAACGCTTCAATCCATACGTTACAACCGCGGCTCCCTCCAGCTTCTCGACCAGAGAAAGCTCCCTCTGGAGACAACTTACTTGGAAATTCGGGATTCAACAGATGGCTGGAATGCCATTCGGGATATGGTGGTCCGAGGAGCACCTGCTATTGCGATTGCGGCGGCACTCTCTTTGGCTGTGGAGGTGTTCAATTTAGACGGTTTCAATGGGTCAGCTGGTGAAGCTGTTTCCTTCCTCCAGAATAAATTAGAATATCTTGTCTCAAGTCGGCCAACTGCAGTGAATCTATCGGATGCTGCGGGAAAACTCAAAGAAGTCGTATCAACTGCTGCTGCTACCACTTCAGAGGGCAGGACTGTTTTCCAGGCATTTATAGAAGCTGCTGAAGTTATGCTTGAGGATGATGTTGCCTCAAATCGAGCTATTGGCTCTTATGGAGCTAGCTGTATTCAGCAACAAACTGAGAAAAAAAAGCTCTCTGTTTTGACACATTGCAATACTGGAAGTCTTGCCACAGCTGGATACGGTACTGCTCTGGGTGTGATCCGTGCACTTCACAGTGCAAAAGTTCTAGAAAGAGCTTATTGCACTGAAACACGCCCGTTTAATCAAGGATCTAGACTGACTGCCTATGAGTTGGTGCATGAAAAAATACCAGCAACTCTTATTGCTGATTCTGCTGCAGCTGCGCTAATGAAAGCTGGAAGTGTGGATGCTGTTGTTGTTGGGGCTGATCGTGTTGCATCAAATGGTGACACAGCCAACAAAATTGGAACCTACAGTGTTGCCTTGTCCGCAAAGTTTCATAATGTACCTTTTTATGTGGCTGCCCCCCTCACCTCCATTGATCTATCACTTTCTTCTGGACAAGAAATTGTAATTGAGGAGAGGTCTCCCAAGGAATTGTTGAACGCACGTGGAGGACTTGGAGAGCAGGTTGCTGCCTCAGGAATTTCTGTGTGGAACCCGGCTTTCGATGTTACTCCTGCTAATCTAATATCTGGGATCATCACGGAGAAGGGTGTCATTACGAAGACTTCTGATGATGCATTTGACATCAAAGCTTTCGTGCAGAAAACAGGTTAA 1116 0.4651 MAREFNDVAATLQSIRYNRGSLQLLDQRKLPLETTYLEIRDSTDGWNAIRDMVVRGAPAIAIAAALSLAVEVFNLDGFNGSAGEAVSFLQNKLEYLVSSRPTAVNLSDAAGKLKEVVSTAAATTSEGRTVFQAFIEAAEVMLEDDVASNRAIGSYGASCIQQQTEKKKLSVLTHCNTGSLATAGYGTALGVIRALHSAKVLERAYCTETRPFNQGSRLTAYELVHEKIPATLIADSAAAALMKAGSVDAVVVGADRVASNGDTANKIGTYSVALSAKFHNVPFYVAAPLTSIDLSLSSGQEIVIEERSPKELLNARGGLGEQVAASGISVWNPAFDVTPANLISGIITEKGVITKTSDDAFDIKAFVQKTG 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00493 371 SUPERFAMILY NagB/RpiA/CoA transferase-like 10 357 IPR037171 -
Viun9g00493 371 Gene3D - 202 367 IPR042529 -
Viun9g00493 371 Gene3D - 10 201 IPR027363 -
Viun9g00493 371 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 9 368 - -
Viun9g00493 371 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 40 355 IPR011559 GO:0044249
Viun9g00493 371 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 13 355 IPR005251 -
Viun9g00493 371 FunFam Methylthioribose-1-phosphate isomerase 167 364 - -
Viun9g00493 371 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 12 364 IPR005251 -
Viun9g00493 371 FunFam Methylthioribose-1-phosphate isomerase 10 201 - -
Viun9g00493 371 Pfam Initiation factor 2 subunit family 54 354 IPR000649 GO:0044237
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00493 51 369 Eukaryotic Initiation Factors Gene Family AT2G05830 77.188 3.36e-174 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00493 K08963 - gmx:100799311 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00493 9 3524762 3528057 Viun9g00493 9 3524762 3528057 ECH