Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00492 ATGCAGAAGAAGTCGACATTGCCACTGAGCGACGCGAATGCCAACAGAAAGAAGAAGGAAGTGCGGAACAAGGAAACGTTGGTGAAGCTTCTAAGATGGCATTTTGGGTACCCTGATTTTAGGGGCATGCAATTGGACGCTATTCAGTCGGTGCTTGCAGGAAAGGATTGTTTTTGTCTTATGCCAACTGGGGGAGGCAAGTCAATGTGTTATCAGATCCCTGCATTGGCAAAACCAGGAATTGTGCTCGTTGTATCTCCTTTAATAGCCTTAATGGAAAACCAAGTAATGGCACTGAAGGAGAAAGGGATTGCAGCAGATTTTCTCTCCTCAACAAAAACAGCGGATGCTAGAGTAAAGATTCACGAGGACCTTGATTCTGGAAAACCTTCGACAAGGCTGCTATATGTGACTCCAGAGTTAATAGCAACACCAGGATTTATGTCAAAGCTGACAAAGATTTATACTAGGGGGCTGCTAAATCTTATTGCCATAGATGAGGCGCATTGCATCTCAAGTTGGGGTCATGATTTCAGACCTAGCTACCGTAAGCTTTCATCTTTGAGAAGCCACCTACCAGATGTACCAATATTAGCTTTGACTGCTACTGCTGCACCAAAGGTTCAGAAGGATGTAGTTGAATCCTTGCGGATGCAAAATCCATTAATACTCAAGTCTTCATTTAATCGTCCAAATATATATTATGAAGTTAGATACAAAGATCTATTGGATGATGCTTTTGCTGATTTATCTAATACACTCAAATCTCTGGGAGATGTCTGTGCAATAGTGTATTGCCTTGAACGTTCAATGTGTGATGACTTATCAAGTAATCTATCCCAAAGTGGCATTTCATGTGCTGCTTATCATGCAGGATTGAATAATAAAATGCGAACTTCGGTGTTAGATGATTGGATTTCTTCTAAGATAAAAGTTGTTGTTGCCACTGTGGCTTTTGGAATGGGCATTGATAGAAAGGATGTCAGAATTGTTTGCCATTTCAATATTCCCAAGTCAATGGAAGCATTCTATCAAGAGTCCGGCAGAGCTGGTCGTGATCAATTGCCATCTAGAAGTCTGTTGTACTATGGGATAGATGATCGCAAGAGAATGGAATTTATATTAAGTAAATCGGGGAGCAAGAAGTCACAGGCATCTAGTTCGCAAGAAGAATCATCCAAAATATCCCTGATTGCTTTCAATCAGATGGTTGAATACTGTGAAGGATCTGGATGCCGCAGGAAAAGGATTCTTGAGAGTTTTGGGGAACAGGTAGCTGCATCACTATGTGGAAAAACATGTGATGCCTGCAGACATCCTAACATAGTTGCCAGATGTTTGGAGGATCTCAAAACTGTTTGTGCTCTACGCCATAAAAGTGGTTCATCTCGTGTTTTTATTACCAGTGCCACTGCCGCAATTAATGGAGAACAGTTATCTGAATTCTGGAATCGGGGAGAGGAAGCAAGTGGATCAGAGGAAGATATATCTGATTCAGAAGATGGTAATGACGTTGTGAACAACCTAACCAGGTCAAAGCTTCAATCCAGATTGGGAGTAAATGAAAAGCTTGCTATGTTACAACGGGCAGAAGAAAACTTCTACAGAAATAATAACAGTTATAAACAGAACAACAAAGTTGACAAGAATGCTATCTCGGATCCAATGCGAGGATCAAGCAGGCAAAGGTTACAAAATGCTCTAAAACAGGTTCACCAACGGCTTGACAACAAGATTGAAGTGGATACGTCAGCATCTTTTCTTGAAGATGAATGCTACAAGAAATATGGGAAGGCTGGCAAATCATTCTATTATTCGCAAGTGGCAAGTACTGTAAGATGGCTGACGACTGCTAGCTCCAGCGAATTGATGAACCGACTTTGTGCAATTAATGCTTCTGCTGAAGCTGAACAGTCCCTTACGCCAGCTGAACAGCCCTTCAAACCGCCACCTACTTTGGATCCTTGTGCAGAAGATGATACCAGCAATGAATACTCTGGTAATGCTAGATCAGAAACTTCTCCGTGTATTGTGCCAATGGAAAGCTGTTCGTTTAATAATACCAACTTGCCACAAATACCATCCTTCTCTGAATTCGTAAATAGTAGGAAAACAAAAGGGGACCAGTTAAATGACACAAAGAAGCATTCAAGAATCGAAAAGAGGATGAGGATGCAGTAA 2181 0.4136 MQKKSTLPLSDANANRKKKEVRNKETLVKLLRWHFGYPDFRGMQLDAIQSVLAGKDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVMALKEKGIAADFLSSTKTADARVKIHEDLDSGKPSTRLLYVTPELIATPGFMSKLTKIYTRGLLNLIAIDEAHCISSWGHDFRPSYRKLSSLRSHLPDVPILALTATAAPKVQKDVVESLRMQNPLILKSSFNRPNIYYEVRYKDLLDDAFADLSNTLKSLGDVCAIVYCLERSMCDDLSSNLSQSGISCAAYHAGLNNKMRTSVLDDWISSKIKVVVATVAFGMGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSRSLLYYGIDDRKRMEFILSKSGSKKSQASSSQEESSKISLIAFNQMVEYCEGSGCRRKRILESFGEQVAASLCGKTCDACRHPNIVARCLEDLKTVCALRHKSGSSRVFITSATAAINGEQLSEFWNRGEEASGSEEDISDSEDGNDVVNNLTRSKLQSRLGVNEKLAMLQRAEENFYRNNNSYKQNNKVDKNAISDPMRGSSRQRLQNALKQVHQRLDNKIEVDTSASFLEDECYKKYGKAGKSFYYSQVASTVRWLTTASSSELMNRLCAINASAEAEQSLTPAEQPFKPPPTLDPCAEDDTSNEYSGNARSETSPCIVPMESCSFNNTNLPQIPSFSEFVNSRKTKGDQLNDTKKHSRIEKRMRMQ 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00492 726 CDD DEXHc_RecQ 29 229 - -
Viun9g00492 726 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 253 394 IPR001650 -
Viun9g00492 726 SMART ultradead3 36 238 IPR014001 -
Viun9g00492 726 MobiDBLite consensus disorder prediction 1 20 - -
Viun9g00492 726 SMART helicmild6 273 354 IPR001650 -
Viun9g00492 726 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 222 IPR014001 -
Viun9g00492 726 MobiDBLite consensus disorder prediction 638 673 - -
Viun9g00492 726 MobiDBLite consensus disorder prediction 705 726 - -
Viun9g00492 726 PANTHER DNA HELICASE RECQ FAMILY MEMBER 17 604 - -
Viun9g00492 726 Gene3D - 2 229 IPR027417 -
Viun9g00492 726 Pfam Helicase conserved C-terminal domain 253 352 IPR001650 -
Viun9g00492 726 Pfam RecQ zinc-binding 367 438 IPR032284 -
Viun9g00492 726 NCBIfam RecQ family ATP-dependent DNA helicase 30 442 IPR004589 GO:0004386|GO:0006310
Viun9g00492 726 Coils Coil 561 581 - -
Viun9g00492 726 MobiDBLite consensus disorder prediction 659 673 - -
Viun9g00492 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 374 IPR027417 -
Viun9g00492 726 MobiDBLite consensus disorder prediction 701 726 - -
Viun9g00492 726 Pfam DEAD/DEAH box helicase 43 210 IPR011545 GO:0003676|GO:0005524
Viun9g00492 726 CDD SF2_C_RecQ 230 363 - -
Viun9g00492 726 Gene3D - 230 456 IPR027417 -
Viun9g00492 726 FunFam ATP-dependent DNA helicase 21 229 - -
Viun9g00492 726 FunFam RecQ family DNA helicase 230 455 - -
Viun9g00492 726 MobiDBLite consensus disorder prediction 485 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00492 Viun-Chr9 3514279 3522428 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00492 33 352 Eukaryotic Initiation Factors Gene Family AT3G19760 21.958 2.07e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00492 K10901 - gmx:100819601 1231.47