Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00486 ATGACCCTGATGAAAAGCATATGGAAATCCATCTTCCCGGGTTGTTACAAGGGTGAGTATCCCTCTCCGAAGCCAAAGAAGGTGGTGGCTACAAAGCCAAATTCTTCTCACAGGATTTCTGTCACGGATTTGAGTTATCCAAGCACGACTCTTTCAGAGGATCTCTCCATTTCCCTAGCGGGGACCAACCTCCATGTTTTCTCACTTGCTGAGCTCAAGATCATCACGCAGTCTTTCTCTTCCAGCAACTTTCTAGGAGAAGGTGGGTTCGGACCCGTGCATAAAGGGTTCATTGATGACAAGCTCAGGCATGGCCTCAAGGCTCAACCCGTGGCTGTTAAGCTCTTGGACTTGGATGGCTCGCAGGGCCACAAAGAGTGGTTGACTGAAGTTGTTTTTCTGGGGCAACTGAGGCATCCTCATCTGGTGAAGCTGATAGGATACTGTTGTGAAGAAGAACACAGACTTTTGGTATATGAATATTTACCAAGAGGAAGCTTGGAGAATCAACTATTTAGAAGATTCACAGCATCACTACCATGGTCAACGAGAATGAAAATTGCTGTTGGGGCTGCCAAGGGTCTAGCCTTTCTTCATGAAGCCGAGAAGCCAGTCATCTACAGAGATTTCAAAGCTTCCAACATCTTGTTAGATTCTGATTACAATGCAAAGCTATCAGATTTTGGGTTGGCAAAAGACGGTCCCGAAGGAGATGACACCCACGTTTCAACCCGAGTAATGGGCACACATGGATACGCAGCCCCAGAATATGTGATGACAGGTCACTTGACAGCAATGAGTGATGTGTATAGTTTTGGGGTAGTGCTGTTGGAGTTGCTGACAGGGAGAAGGTCAGTGGACAAGAACCGTCCTCCAAGGGAACAGAACCTAGTGGAGTGGGCAAGGCCAATGCTGAATGATTCAAGAAAACTGGGTAGGATAATGGACCCTAGACTTGAAGGGCAGTATTCTGAAATGGGGACCAAAAAAGCAGCTGCATTGGCCTACCAGTGTCTCAGCCACAGACCTAGGAGCAGACCCTCCATGAGCACAGTGGTTAAGACCCTTGAGCCACTTCAGGATTTTGATGACATCCCAATAGGAACATTTGTTTACACTGCTCCACAAGATCATAACAACAACGAAGTGCAGAACAATGCAAAGGATCAGCTTGAAACACCTAGAAGGAGGGAACACAACAGCAACAACGGCCAACACCATCGTAGGAACCACAACCTTAACAGACATCATCCTCTGAAGTCCCCGAAGAGCCCTAAGCCACAATCACACACACATTTACGTTCAGTGAATAACGATCACAACAACAACAACAACAGACACAGAAATGGTAGAGGAAGTGGATCAAACTCTCCTCCATCACATGTGAAAAGGCCTGGAATTGTTACCTGA 1410 0.4674 MTLMKSIWKSIFPGCYKGEYPSPKPKKVVATKPNSSHRISVTDLSYPSTTLSEDLSISLAGTNLHVFSLAELKIITQSFSSSNFLGEGGFGPVHKGFIDDKLRHGLKAQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHPHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRRFTASLPWSTRMKIAVGAAKGLAFLHEAEKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTHGYAAPEYVMTGHLTAMSDVYSFGVVLLELLTGRRSVDKNRPPREQNLVEWARPMLNDSRKLGRIMDPRLEGQYSEMGTKKAAALAYQCLSHRPRSRPSMSTVVKTLEPLQDFDDIPIGTFVYTAPQDHNNNEVQNNAKDQLETPRRREHNSNNGQHHRRNHNLNRHHPLKSPKSPKPQSHTHLRSVNNDHNNNNNRHRNGRGSGSNSPPSHVKRPGIVT 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00486 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Viun9g00486 469 Gene3D Transferase(Phosphotransferase) domain 1 162 375 - -
Viun9g00486 469 Pfam Protein tyrosine and serine/threonine kinase 83 356 IPR001245 GO:0004672|GO:0006468
Viun9g00486 469 MobiDBLite consensus disorder prediction 401 423 - -
Viun9g00486 469 CDD STKc_IRAK 85 359 - -
Viun9g00486 469 ProSiteProfiles Protein kinase domain profile. 79 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00486 469 FunFam Probable serine/threonine-protein kinase PBL8 162 375 - -
Viun9g00486 469 PANTHER OS01G0588500 PROTEIN-RELATED 46 360 - -
Viun9g00486 469 MobiDBLite consensus disorder prediction 373 388 - -
Viun9g00486 469 FunFam Serine/threonine-protein kinase BIK1 47 161 - -
Viun9g00486 469 MobiDBLite consensus disorder prediction 373 469 - -
Viun9g00486 469 Gene3D Phosphorylase Kinase; domain 1 43 161 - -
Viun9g00486 469 SUPERFAMILY Protein kinase-like (PK-like) 55 357 IPR011009 -
Viun9g00486 469 MobiDBLite consensus disorder prediction 424 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00486 Viun-Chr9 3446521 3449096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00486 65 356 Glycoside Hydrolase AT3G07070 53.898 2.01e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun9g00486 PK_Tyr_Ser-Thr 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00486 - - gmx:100797003 801.586