Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00472 ATGATGAATGGGAGGAACAGGTTTCCCTTCACCCCATCACAGTGGCAAGAGCTTGAACATCAAGCTCTAATCTACAAGTACATGGCTTCAGGGATTTCGATTCCACCTGATCTTCTCTTCACCATAAAAAGGAGCTACTTTGATTCCCCTCTCTCCTCAAGGCTTTTGCCTAACCAGCCACAGCACTTTGGATGGAACTATCTGCAGATGGGTTTGGGGAGAAAAATAGACCCTGAGCCTGGGAGGTGTAGAAGAACTGATGGCAAAAAATGGAGGTGCTCCAAAGAGGCATACCCAGATTCTAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCGTCATCATCAAACACAAATGCTTCAACTCACCAACACCAACACCACCAGCAACAACAGCAACAACCAATCTCATCAATCACCAAACTCAATACTACTCTTTCTCCTCTTGCATCATCATCGTCTGAATCACACTATGCTCCCTTTCTCTATCAACACCCTCCATCGTCAAGGTCCTCTGCCATTGGCTTGTCCTTTGAAGACAACAGTGCTCCCTTGTTTCTTGACACTGGCTCTTGCTCTCAGTCCAACACAGATTGCAGGAGTAGGTATGCATACGGAGAGAAAGAAGAGGTGGATGAACACGCTTTCTTCACAGAGCCGTGTGGTATCATGAAAAGCTTTTCTGGTTCCTCCATGGATGATTCTTGGCAACTCACGCCATTGACTATGAGCTCCTCCTCTTCTTCCACCAAACAGAGGAGTTCCTTTGGCCTGTCCAATGATTATTCTTGCCTGCAACTCCAGAGCCACTCAAAGCCTCAGGAGCAACAAGATCAGGGTGGTTGCTACATGCTGGGTGGAGGAGGCCAACTTGGAAAAGAAGAACCTCAGAAAACCGTTCATCGCTTCTTCGATGAATGGCCCCACAAAGGAAGACAAGGATCTTGGCTTGATTTGGATGACAAATCTTCCACAACCCAGCTTTCAATTTCCATCCCCACCTCTTCTCATGATTTCCCAGCCTTCAGTTCCAGAACCCATCATGATGGTTGA 1092 0.467 MMNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRSYFDSPLSSRLLPNQPQHFGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPSSSNTNASTHQHQHHQQQQQQPISSITKLNTTLSPLASSSSESHYAPFLYQHPPSSRSSAIGLSFEDNSAPLFLDTGSCSQSNTDCRSRYAYGEKEEVDEHAFFTEPCGIMKSFSGSSMDDSWQLTPLTMSSSSSSTKQRSSFGLSNDYSCLQLQSHSKPQEQQDQGGCYMLGGGGQLGKEEPQKTVHRFFDEWPHKGRQGSWLDLDDKSSTTQLSISIPTSSHDFPAFSSRTHHDG 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00472 363 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Viun9g00472 363 MobiDBLite consensus disorder prediction 104 148 - -
Viun9g00472 363 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Viun9g00472 363 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Viun9g00472 363 MobiDBLite consensus disorder prediction 341 363 - -
Viun9g00472 363 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Viun9g00472 363 MobiDBLite consensus disorder prediction 120 148 - -
Viun9g00472 363 Pfam WRC 78 120 IPR014977 -
Viun9g00472 363 MobiDBLite consensus disorder prediction 282 304 - -
Viun9g00472 363 PANTHER GROWTH-REGULATING FACTOR 5 8 351 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00472 Viun-Chr9 3339875 3342213 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00472 7 120 GRF Transcription Factor Family AT3G13960 71.053 1.59e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Viun9g00472 WRC 7.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00472 - - vun:114162468 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00472 9 3339875 3342213 Viun9g00472 9 3339875 3342213 ECH
Viun3g05428 3 60311503 60314402 Viun9g00472 9 3339875 3342213 PCT