Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00464 ATGCACTCCCTTCAAGAACCGATTATTATGGTTCTAAACATGGAAACTATAATAGCTGATTTTGAGATCATTGGGAATCCGAAGCCATCCTTGGATTCAGATTTACCAAGTGTGAGAGCTATAGCAGATAACACTGTGGAGAATTTGGCCAGGAGTAACAATACTAGTAATACTATTAGTAACTCTGCTGCTCAAAATGCAAGTCATGATAAAGCCCAGAATTTCAGGCCAACAATTCAACCTCCATACCAACCGCCTCCAGTTTACAAAGGCCGTGGTGCAGTTGTGAAAAATGAGGCGCCAGCACGCATCATTCCTATAGCTGCTTTAAATCCTTATCAAGGTCGGTGGGCTATCAAGGCAAGGGTAACTGCTAAAGGGGATCTGCGCCGCTATAATAATGCACGCGGTGATGGGAAAGTCTTCTGGTTTGATCTCCTGGATTCTGATGGAGGTGAAATACGAGTAACATGCTTTAATGCTGTTGTTGATCGCTTCTATAATGTAATTGAGGTTGGTAAAGTTTACATGATATCGAAAGGTAGCTTAAAACCTGCACAGAAGAATTTCAACCACTTGAAGAATGAATGGGAAATTTTTTTGGAATCAACTTCAACAGTGGAGTTGTGCCCGGATGAGGATGATTCTATACCTAGACAGCAGTTCTCATTTCGACCTATCAGTGACATTGAGAATGTTGACAATAACTCCATCCTTGATGTTATTGGGGTTGTGACATCTGTGAACCCTTCTGTTCCCATCTTGAGGAAGAATGGAATGGAAACCCTGAGAAGAATTTTGAGTCTAAAAGACAGTTCTGGCAGGAGTGTTGAATTTACACTGTGGGGAGAATTTTGCAACAGGGAAGGGCAACAATTGCAAGAGATGGTAGATTCTGGGTTTTTCCCTATTTTAGCAGTCAAAGCGGGGAAGGTGAATGATTTTAGTGGAAAGTCGATAGGCTCTATTTCTACCACACAGCTTTTCATAAATCCTGAGTTCCCCGAGGCCAATAGCTTAAGACAATGGTTTGATCTAGTTGGAAAAGATTCTGCTTCCCATTCAATTTCTAGGGACGTTATTCCTGGAGGATCGAAGAATGAGGTACGCAAAACTGTATCTCAAATCAAGGATGAAGGTCTAGGACGATCAGACAAGCCAGACTGGATAACAATAAGGGCAACTATATCGTTCATCAAGACTGATACATTTTGTTACACAGCTTGCCCTCTGGTGATTGGAGATCGACAATGCAATAAGAAAGTGACTAGGTCAGGAAACACAAGATGGCAATGTGATAGATGCAATCAGGAATTTGAGGAGTGTGATTATCGATACCTTCTGCAAGCTCAAATTCTGGATGGCACAGGATTAACTTGGGTAACTGCTTTCCAGGAAGCAGGTGAAGAGATTATGGAGTATTCAGCGAAAGATCTGTACATGTTGAAACATGAACAACAGGATGATGAGAGGTTTGGAGAAATAATCAAGAGCCGACTCTTCAAACAGTTTATGTTTAGGCTGAAAATCAAAGAGGAATTATATGGCGATGAACAAAAGGTCAAGATTACTGTAGTTAAGGTAGATAAGGTGAACTATTCTTCAGAGAGTCAATACATGCTTGATTCGATTTCCAAGTTTTGTAGGAAGTGA 1653 0.4102 MHSLQEPIIMVLNMETIIADFEIIGNPKPSLDSDLPSVRAIADNTVENLARSNNTSNTISNSAAQNASHDKAQNFRPTIQPPYQPPPVYKGRGAVVKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFWFDLLDSDGGEIRVTCFNAVVDRFYNVIEVGKVYMISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDDSIPRQQFSFRPISDIENVDNNSILDVIGVVTSVNPSVPILRKNGMETLRRILSLKDSSGRSVEFTLWGEFCNREGQQLQEMVDSGFFPILAVKAGKVNDFSGKSIGSISTTQLFINPEFPEANSLRQWFDLVGKDSASHSISRDVIPGGSKNEVRKTVSQIKDEGLGRSDKPDWITIRATISFIKTDTFCYTACPLVIGDRQCNKKVTRSGNTRWQCDRCNQEFEECDYRYLLQAQILDGTGLTWVTAFQEAGEEIMEYSAKDLYMLKHEQQDDERFGEIIKSRLFKQFMFRLKIKEELYGDEQKVKITVVKVDKVNYSSESQYMLDSISKFCRK 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00464 550 CDD RPA1_DBD_B 238 345 - -
Viun9g00464 550 Gene3D - 357 548 IPR012340 -
Viun9g00464 550 PANTHER REPLICATION FACTOR A 1, RFA1 117 525 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Viun9g00464 550 Pfam Replication factor-A C terminal domain 389 540 IPR013955 -
Viun9g00464 550 CDD RPA1_DBD_C 373 546 IPR047192 -
Viun9g00464 550 FunFam Replication protein A subunit 216 354 - -
Viun9g00464 550 Gene3D - 102 213 IPR012340 -
Viun9g00464 550 FunFam Replication protein A subunit 355 547 - -
Viun9g00464 550 SUPERFAMILY Nucleic acid-binding proteins 370 547 IPR012340 -
Viun9g00464 550 FunFam Replication protein A subunit 103 212 - -
Viun9g00464 550 SUPERFAMILY Nucleic acid-binding proteins 221 348 IPR012340 -
Viun9g00464 550 SUPERFAMILY Nucleic acid-binding proteins 103 217 IPR012340 -
Viun9g00464 550 CDD RPA1_DBD_A 106 209 - -
Viun9g00464 550 Pfam OB-fold nucleic acid binding domain 118 201 IPR004365 GO:0003676
Viun9g00464 550 Gene3D - 215 355 IPR012340 -
Viun9g00464 550 Pfam Replication protein A OB domain 227 331 IPR031657 -
Viun9g00464 550 NCBIfam replication factor-a protein 1 (rpa1) 19 546 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00464 Viun-Chr9 3260389 3263377 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00464 8 542 Core DNA Replication Machinery Family AT2G06510 71.325 0.0 807
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00464 K07466 - gmx:100792409 950.658