Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00461 ATGGAAGAAGAAGGAGACGTGGCAGACAAGAAAAAGACAAAGAACGAGGTGGTTCTACGAATTTCAGACACTGAAGAAGCCATTAAAGCAAAGGAGCAAAGGGTTTCCAGAAGCTTCCCAGTAGCTGAAAAATGTTCCCTTTCTCCTCACCATAATATCCAGATAGGTAAAGGGTTTAGAGATTCTCATGGTGAAATCACAGAGCACAATGGTCAAGTATCCTCAGAGTTGGTGACAACTACAAAGAGGTTGATGGGTCGGTCGGAGTTTTCAAAACCAAAGTCCAGAATGGTGGAACCGGCGTGTCCAAAAGATGCAAACTTTGTCGAAGAAAAGGCTAAAAAGACAAGTTCACCTGCAAGGAATTCTCTTAACAAGAATGTTCCTGACGCAACTGTTGTCACCCCAAGAAGCCCTTTCCTTGGGATACCAGGGGAAGAAGAAGATGATGACGAAGAAGTGTACAAGACTGCAAATGTTGAAGTGAGCAAGAGATCTGGTAAGAAGTGCAGAGTTGTAGAGTTGTTTGCTTTTTCTTGCATCGTGGGGTATTTAATTGCATGCTTGACTGTGAATAAGTTGCAAAAAAGGTTTATTTGGGGATTGGAACTGTGGAAATGGTGTGTATTGGTTTTGGTTGTCCTCTGTGGTAGACTGGTCACAGAGTGGCTTATCAATGTTTTGGTTTTCTTGATTGAGAGGAACTTTTTGTTTAAGAAGAAGGTTTTGTATTTTGTTTATGGTGTCAAGAAGAGTGTTCAGGGCTTTATATGGCTAAGTTTGGTTCTTCTGACATGGGGACTGCTTTTCAACCATGGAGTGAAGAGAACCAGAAAGGTTACTAAGATTCTTGGTTACATTACTAGGGCCCTTGCTTCTTGTCTTCTTGGAGCAGCTATATGGTTGGTCAAAACATTGTTGATAAAGCTTTTAGCTTCGAAATTTCAATCTACTAGATTTTTTGACAGGGTGCAAGAATCAATCTTTCATCAATACATTCTCAAGACTCTTTCAGGTCCTCCCTTGAGGGAGGTGGCTGAAAATGTAGGTTGGACTTCAAATCTTGGTCAACTCAGTTTTAAGACCATGAATAGTGAGAAAGAAGGGGAGAAAGAACAAGTCATTGATGTAGACAAGCTCAAGAAAATGAAACCAGAGAAAGTTTCTGCTTGGACAATGAAAGGTTTGATTAATGTGATAAAGAGTTCTGGGTTGTCTACCATCTCCTATGCACCGGATGAAGATGAGAATGACCAGAAAGATAATGAAATTAATAGCGAGTGGGAAGCAAAGGCAGCTGCATACAGAATTTTTCGGAACGTAGCCAAGCCAGGACACAATTATATTGAGAAGGATGACCTCTTGCGATTCATGAAAAATGAAGAAGTGGAAAATGTGCTTCCACTATTTGAAGGGGCAGTTGAGACTAGAAGAATTAAGAGGAAGTCTCTCAAGAACTGGCTGGTAAAAGTCTACTTTGAACGCCGATCGCTCGTACATTCACTAAATGATACCAACACAGCTGTTGATGACTTGAATATGCTTGTTTCTTTCGTCCTGCTTATTGTGATCCTTATTGCGTGGCTTCTTATAATGGGATTCTTAACTACTGAAGTTCTTGTCTTTATTTCATCCCAGCTTTTACTTGTGGTTTTCATGTTTGGCAACACAGCTAAGACTGTGTTTGAAGCCATTATATTTGTTTTTGTGATGCACCCTTTTGATGTTGGTGATCGCTGTGTTATTGATGGAGTTCAGATGGTTGTGGAAGAGATGAACATACTAACCACCGTCTTTCTGAGATATGACAATGAAAAGATTTCCTATCCAAATTCAGTTCTGGCAACCAAGCCAATCAGTAACTTCTACAGGAGTCCAGAAATGAGTGATTCTGTTGAATTTGCTGTTGATTTTTCTACCTCTGTTGAAAGTATTGGAGCTTTGAAGGCAAAGTTAAAAGTATATTTGGAGAGTAGACCTCGGCATTGGCGTCCCAACCACAATGTAGTGGTTAAGGATATTGAGAATGTGAATAAGATGAAAATGGCTGTGTATGTTACTCACACCATCAATTTTCAGAACTATGGGGAGAAGAACAGCAGAAGATCCGAATTAGTGCTGGAGTTAAAGAAAATTCTTGAAGATCTTAATATTAAATATCATCTGCTCCCACAAGAAGTTCATCTCAGTTATGTAAGGTCACAAGACTCAACAGCACAGACATTTTGA 2229 0.3988 MEEEGDVADKKKTKNEVVLRISDTEEAIKAKEQRVSRSFPVAEKCSLSPHHNIQIGKGFRDSHGEITEHNGQVSSELVTTTKRLMGRSEFSKPKSRMVEPACPKDANFVEEKAKKTSSPARNSLNKNVPDATVVTPRSPFLGIPGEEEDDDEEVYKTANVEVSKRSGKKCRVVELFAFSCIVGYLIACLTVNKLQKRFIWGLELWKWCVLVLVVLCGRLVTEWLINVLVFLIERNFLFKKKVLYFVYGVKKSVQGFIWLSLVLLTWGLLFNHGVKRTRKVTKILGYITRALASCLLGAAIWLVKTLLIKLLASKFQSTRFFDRVQESIFHQYILKTLSGPPLREVAENVGWTSNLGQLSFKTMNSEKEGEKEQVIDVDKLKKMKPEKVSAWTMKGLINVIKSSGLSTISYAPDEDENDQKDNEINSEWEAKAAAYRIFRNVAKPGHNYIEKDDLLRFMKNEEVENVLPLFEGAVETRRIKRKSLKNWLVKVYFERRSLVHSLNDTNTAVDDLNMLVSFVLLIVILIAWLLIMGFLTTEVLVFISSQLLLVVFMFGNTAKTVFEAIIFVFVMHPFDVGDRCVIDGVQMVVEEMNILTTVFLRYDNEKISYPNSVLATKPISNFYRSPEMSDSVEFAVDFSTSVESIGALKAKLKVYLESRPRHWRPNHNVVVKDIENVNKMKMAVYVTHTINFQNYGEKNSRRSELVLELKKILEDLNIKYHLLPQEVHLSYVRSQDSTAQTF 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00461 742 PIRSF Memb_At2g17000 2 741 IPR016688 -
Viun9g00461 742 Gene3D - 573 622 IPR023408 -
Viun9g00461 742 SUPERFAMILY Sm-like ribonucleoproteins 563 622 IPR010920 -
Viun9g00461 742 FunFam Predicted mechanosensitive ion channel 573 622 - -
Viun9g00461 742 Pfam Mechanosensitive ion channel 514 719 IPR006685 GO:0016020|GO:0055085
Viun9g00461 742 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 8 732 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00461 Viun-Chr9 3252070 3255513 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00461 80 730 Mechanosensitive Ion Channel Family AT5G12080 53.163 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00461 K22048 - gmx:100777332 1144.03