Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00459 ATGGGTGATGTTCTAAGCCCTTTCACAGTTTCATCCCCTCCTCCACCCTCTTCCGACAGCAACAACAACAATAACAACAGCATGCCGATGTTGTACTACGGTCTTGTGGTGGTGGGAACCGCCGCCATAGTACTGGCCATATACAACCTCTTCCTCCTGAAACGCAGCCACGCGCGGTCGCCGACGAGTCCCAATGGCGCGGGAACAACAACAATCGAAGAGGTTTCGGAGATAACGAGGAGGTTGGAGAACGAACAGAGACAGTTGCTTTCGAGCTTCAAGTACAAGAAAGAAAAAGAAGAGTTGGAAGATTTTGAGTGCCCCGTTTGCTTATCGGTTTACGAAGAAGGAGAAGAAGTGAGGAAGCTTCCACAGTGCAAACACTATTTCCACGTTCTTTGCATAGACATGTGGCTCTATTCTCACTTCGATTGCCCCATTTGTAGAACACCCGTTCTCCTCGCCCACCACCACCTCTCTCCGGTCGATGCCTTCATTGAATCCGGTGCCATCTCATAG 519 0.501 MGDVLSPFTVSSPPPPSSDSNNNNNNSMPMLYYGLVVVGTAAIVLAIYNLFLLKRSHARSPTSPNGAGTTTIEEVSEITRRLENEQRQLLSSFKYKKEKEELEDFECPVCLSVYEEGEEVRKLPQCKHYFHVLCIDMWLYSHFDCPICRTPVLLAHHHLSPVDAFIESGAIS 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00459 172 CDD RING-H2_EL5-like 106 149 - -
Viun9g00459 172 SMART ring_2 107 148 IPR001841 -
Viun9g00459 172 SUPERFAMILY RING/U-box 96 155 - -
Viun9g00459 172 Pfam Ring finger domain 106 149 IPR001841 -
Viun9g00459 172 MobiDBLite consensus disorder prediction 1 23 - -
Viun9g00459 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 156 IPR013083 -
Viun9g00459 172 FunFam RING-H2 finger protein ATL1 69 154 - -
Viun9g00459 172 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Viun9g00459 172 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00459 Viun-Chr9 3228916 3229902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00459 11 158 C3H Transcription Factor Family AT1G20823 31.126 1.59e-20 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00459 - - gmx:102662517 201.83