Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00457 ATGCTCACGTGCATAGCACGTTCCAAGAAACTCGACTCGGCGAGCGACGATCCGAGTTCGCGGGGCGCCAAATCGCTAACATGTCAGCTGAAGGAGATGGCGCTGAAGGCGTCGGGATCGTACAAGCAGTGCGGTCCGTGCGCGCCGCCGCAGAGTCGACTGAGTCGCGGGGGCGAGTCCGATTCGGAGTCGTCGCGGCGGCGGTGGGGGAAGGAGCTGGAGGCGCGGTTGAAGGGGATTTCGAGCGGCGAGGGGACGCCAAGCTCCAGCGGGAGGAGAACGGTGGTGGTGCTGGAAGAGGAGGCGGAGCCGAAGGAGTGGGTGGCGCAGGTTGAGCCCGGCGTTTTGATCACGTTCGTATCGCTTCCGCGTGGCGGGAACCATCTCAAACGGATTCGGTTCAGTCGCGACATTTTTAACAAATGGCAAGCTCAGAGATGGTGGGCAGAGAATTACGACAAGGTGATGGAACTTTACAATGTTCAACGGCTTAACCGGCAAGCTATACCTCTTCCAACTCCACCAAGGTCTGAAGACGAGAGTTCAAAGCGTGAATCAATAGAAGAGATTCCTGTGACACCTCCGATGGGCAGGGAAAGGCCACCGTGTAATATATTCCGTGGAGGAGGAGGAGGAGGGGTGGCAATGGGGTACTCATCCTCTGATTCGTTCGATCAGCATTCAATGCAATCACGGCATTACTATGAACCGAGTGGTGTGAACTCAACCCCGAAGGTTTCCACCATTAGTGCTGCTGCCAAGACAGATATCTCATCATCAATGGATGCTGATGCTTCTATCAGAAGTAGCTCATCTAGAGAAGCTGATCGCTCTGGCGATTTATCGATCAGTAATGCCAGTGACCTCGATGCTGAATGGGTTGAGCAGGATGAACCTGGGGTTTACATTACCATCAGAGCTCTCCCTGGCGGCAAAAGGGAGCTCAGACGAGTAAGGTTCAGTCGAGAAAAGTTTGGGGAGGTGTATGCTAGACTGTGGTGGGAAGAGAACCGTGCCAGAATACATGAACAGTACTTGTGA 1041 0.5456 MLTCIARSKKLDSASDDPSSRGAKSLTCQLKEMALKASGSYKQCGPCAPPQSRLSRGGESDSESSRRRWGKELEARLKGISSGEGTPSSSGRRTVVVLEEEAEPKEWVAQVEPGVLITFVSLPRGGNHLKRIRFSRDIFNKWQAQRWWAENYDKVMELYNVQRLNRQAIPLPTPPRSEDESSKRESIEEIPVTPPMGRERPPCNIFRGGGGGGVAMGYSSSDSFDQHSMQSRHYYEPSGVNSTPKVSTISAAAKTDISSSMDADASIRSSSSREADRSGDLSISNASDLDAEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEVYARLWWEENRARIHEQYL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00457 346 ProSiteProfiles BRX domain profile. 291 346 IPR013591 -
Viun9g00457 346 MobiDBLite consensus disorder prediction 39 69 - -
Viun9g00457 346 ProSiteProfiles BRX domain profile. 105 160 IPR013591 -
Viun9g00457 346 Pfam Transcription factor regulating root and shoot growth via Pin3 105 159 IPR013591 -
Viun9g00457 346 Pfam Transcription factor regulating root and shoot growth via Pin3 291 345 IPR013591 -
Viun9g00457 346 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 346 IPR044532 -
Viun9g00457 346 MobiDBLite consensus disorder prediction 256 283 - -
Viun9g00457 346 Pfam Transcription factor BRX N-terminal domain 24 47 IPR027988 -
Viun9g00457 346 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00457 Viun-Chr9 3210361 3215011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00457 1 346 Major Intrinsic Protein MIP AT1G31880 42.711 5.59e-83 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00457 - - pvu:PHAVU_009G229100g 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00457 9 3210361 3215011 Viun9g00457 9 3210361 3215011 ECH
Viun3g05409 3 60219262 60224712 Viun9g00457 9 3210361 3215011 PCT