Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00456 ATGGACAGTGGCGGCCACTACAACCCCCGCACCGTCGAAGAGGTTTTCCGGGACTTCAAGGGCCGCAGGTCTGGCATGATCAAAGCCCTTACCACTGATGTTGAGGAGTTTTACCAGCAGTGCGATCCTGAAAAGGAGAACCTATGTCTATATGGATTCCCCAATGAACAATGGGAAGTTAACTTGCCAGCTGAAGAAGTTCCTCCAGAACTTCCCGAGCCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGAAAAGGACTGGTTATCTTTAGTTGCTGTTCACAGTGATGCATGGTTACAGTCAGTGGCTTTCTACTTTGGAGCGAGATTTGGTTTTGATAAAGCTGACAGGAAACGCCTGTTCACTATGATTAATGATCTGCCTACTATATTCGAGGTCGTAACTGGATCTGCAATGAAACAGGCAAAGGAGAAGTCGTCAGACCGCAACAGCAGCAAATCAAAGTCCGGTTCAAAGCGAGGATCTGAGTCTGTGAAGTATGTAAAGCAAGAAGTGAAGGAGGAGGAAGTATTGGACGAAGAAGAAGACGAGGAACATGGGGAGACCTTGTGTGGTGCTTGTGGGGAGAACTACGCATCCGATGAGTTCTGGATTTGTTGCGACATATGCGAGAAGTGGTTTCATGGCAAGTGTGTGAAGATCACTCCTGCCCGGGCTGAGCACATTAAACACTACAAGTGCCCCTCATGCAGCAACAAGAGAGCAAAACCTTGA 744 0.4798 MDSGGHYNPRTVEEVFRDFKGRRSGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLQSVAFYFGARFGFDKADRKRLFTMINDLPTIFEVVTGSAMKQAKEKSSDRNSSKSKSGSKRGSESVKYVKQEVKEEEVLDEEEDEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKHYKCPSCSNKRAKP 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00456 247 SMART PHD_3 193 241 IPR001965 -
Viun9g00456 247 CDD PHD_AL_plant 193 243 IPR044104 -
Viun9g00456 247 SUPERFAMILY FYVE/PHD zinc finger 183 245 IPR011011 -
Viun9g00456 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 242 IPR013083 -
Viun9g00456 247 MobiDBLite consensus disorder prediction 144 187 - -
Viun9g00456 247 FunFam PHD finger alfin-like protein 186 242 - -
Viun9g00456 247 Pfam PHD-finger 194 243 IPR019787 -
Viun9g00456 247 ProSiteProfiles Zinc finger PHD-type profile. 191 243 IPR019787 -
Viun9g00456 247 ProSitePatterns Zinc finger PHD-type signature. 194 240 IPR019786 -
Viun9g00456 247 PANTHER CPG BINDING PROTEIN 8 246 IPR045104 GO:0006355|GO:0042393
Viun9g00456 247 MobiDBLite consensus disorder prediction 145 177 - -
Viun9g00456 247 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00456 Viun-Chr9 3198544 3203895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00456 7 246 Alfin-like Transcription Factor Family AT3G42790 74.380 2.27e-120 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Viun9g00456 Alfin 1.2e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00456 K26274 - gmx:100170699 427.172