Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00447 ATGAAGAAAGGGAGCTTAAGCTCTGGTCTCAAACTCACTGTTCCTGCATCTGATTGGGGTTCATTTTCCACCAAGTTTTTGTCTGAGTCTGAAAGTGAAACGTTCAAGGCAGTGGACTTGCTTGTCGACAAGGAAGGAGTTCGAGTTGTTTCTGAGAAGGAAGAGGAAGCTCCACCACCAATCACGCCACTAGACAACCAGTTGAATCTGGCAGATATTGATACAATCAAAGTGATTGGAAAAGGAAATGGAGGGATAGTGCAATTGGTGCAACACAAATGGACTAATCAATTTTTTGCATTGAAGGAAATTCATATGAATATTGAGGAGCCTATTCAAAGGCAGATAGCACTTGAGCTAAAAATTAATCAATCAGCACAATGTCCTTATGTTGTTGTCTGCTACCAGTCATCCTACCATAATGGTGTCATATCAATCATATTTGAGTACATGGACGGAGGATCCTTAGAAGATCTTCTGAACAAAGTTCAAAAAATTCCAGAGTCGTATCTTGCTGCCATCTGCAAGCAGGTGCTGAATGGTTTAATGTATCTTCACCATGAAAAATACATTATCCACAGGGACTTAAAACCTTCTAATCTGCTGATAAATCATAGAGGGGAGGTAAAGATTACTGACTTTGGTGTAAGCATAATCATGGAAAATACATCTGGTCAAGCAAATACTTTCATTGGCACACACAGCTATATGTCTCCAGAGAGAATCACCAGTAACCAGAATGGCTACGACTACAAAAGTGATATATGGAGCCTGGGACTGATTTTGCTCAAGTGTGCCACGGGGCAGTTTCCATATACACCGCCAGATCAACGTGAGGGATGGGAAAATATTTTCCAGCTTATTGAAGTCATTGTTGAAAAACCTTCCCCCACTGCTCCACCAGAAGATTTTTCTCCAGAATTTTGCTCATTTATCTCAGCATGTTTACAGAAAAATCCAAGAGATAGACCGTCTGCTCGTGACCTTATAAACCATCCTTTTATCAAGTTGTATGAGGACTTGAATGTGGATCTTTCAACTTATTTCTACAACGCAGGATCTACACTTGCAACCATATAG 1080 0.4037 MKKGSLSSGLKLTVPASDWGSFSTKFLSESESETFKAVDLLVDKEGVRVVSEKEEEAPPPITPLDNQLNLADIDTIKVIGKGNGGIVQLVQHKWTNQFFALKEIHMNIEEPIQRQIALELKINQSAQCPYVVVCYQSSYHNGVISIIFEYMDGGSLEDLLNKVQKIPESYLAAICKQVLNGLMYLHHEKYIIHRDLKPSNLLINHRGEVKITDFGVSIIMENTSGQANTFIGTHSYMSPERITSNQNGYDYKSDIWSLGLILLKCATGQFPYTPPDQREGWENIFQLIEVIVEKPSPTAPPEDFSPEFCSFISACLQKNPRDRPSARDLINHPFIKLYEDLNVDLSTYFYNAGSTLATI 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00447 359 Pfam Protein kinase domain 75 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00447 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Viun9g00447 359 PIRSF ILK 20 339 - -
Viun9g00447 359 SUPERFAMILY Protein kinase-like (PK-like) 71 343 IPR011009 -
Viun9g00447 359 ProSiteProfiles Protein kinase domain profile. 73 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00447 359 SMART serkin_6 73 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00447 359 Gene3D Phosphorylase Kinase; domain 1 48 152 - -
Viun9g00447 359 FunFam Mitogen-activated protein kinase kinase 6 154 354 - -
Viun9g00447 359 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 54 348 - -
Viun9g00447 359 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Viun9g00447 359 FunFam Mitogen-activated protein kinase kinase 6 43 152 - -
Viun9g00447 359 CDD PKc_MAPKK_plant_like 71 339 - -
Viun9g00447 359 Gene3D Transferase(Phosphotransferase) domain 1 153 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00447 Viun-Chr9 3144562 3148843 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00447 29 356 MAP Kinase Kinase Gene Family AT4G26070 63.415 1.17e-158 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Viun9g00447 Pkinase 2.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00447 K20603 - gmx:100789241 604.749