Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00422 ATGGAACCTCGCGTGGGGAATAAGTTTCGGCTTGGTCGTAAGATCGGTAGCGGATCGTTTGGAGAGATCTATTTAGGTACTAACATTCAAAATAATGAAGAGGTTGCAGTTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAGTTGCTATATGAATCCAAGTTGTACAGAGTTCTCCAGGGAGGAACTGGAATTCCTGATATTAGATGGTTTGGAGTTGAGGGAGATTACAATGTTCTAGTGATGGATCTGCTTGGACCTAGTCTTGAAGATCTATTTAACTTTTGCAGTAGAAAGCTCTCACTAAAGACAGTTCTCATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTTGTTCATTGTAAATCTTTTCTACATCGGGATATCAAACCAGATAATTTCCTTATGGGATTGGGAAGGCGGGCAAACCAGGTTTACTGTATTGATTTTGGTTTGGCCAAGAAATATAGGGATAGTTCAACCCATCAGCACATTCCATACAGAGAAAATAAGAATTTAACTGGGACTGCTAGATATGCAAGTATGAATACCCACCTTGGCATTGAGCAGAGTCGAAGAGATGATTTGGAGTCTCTTGGTTATGTCTTGATGTATTTCCTGAGGGGAAGTCTCCCTTGGCAAGGACTTAAAGCGGGAACCAAGAAACAGAAATACGAGAGGATCAGTGAAAAAAAGGTTTCTACCTCTATTGAGGCATTGTGTCGAGGTTATCCAACAGAGTTTGCATCATACTTCCATTACTGCCGCTCATTAAGGTTTGATGATAGGCCAGATTATGCTTACCTCAAGAGAATATTTCGTGACCTGTTTATTCGTGAAGGATTCCAGTTTGATTATGTGTTTGATTGGACAATTTTGAAGTATCAACAATCACAGCTAGCCGCCCCTCCTGCGCGTGCTGTTGGTCCAGCTGCTGGAACTAGTTCTGCAATGCCACCAGCTGTGAATAATGCTGATAGACAAACAGGAGAGGAAGAAGGACGACCTCCTCCTGGTCTTATTTCAGGGGATTCCACAAGGAGAAGAATGTCAGGCACCACCTCAAACACTGTAAATATTTCAAGACAGAAAAATCCGGTCACCATGGATGCTGCTCTTAATAAGGAAGCCATGTTATCAAAGCCCAATGTGTTGGGTCAGTCAAGTGGATCAAGGCGAGCGGGTGTTTCTAGTAGCCGTGATGCATTTGCTGGTAGTGATCGTACTACGGAGGTTAACCCTGGAATGCGCAAAATAACATCTGGGAGAAATGCTTCTTCTCATGTCAAGAACTATGAAAGTGCTGTCAAGGGCATTGAAAGTTTGCAATTGGAAAATGAGAAGAGGGCACATTATTAA 1359 0.4231 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQNNEEVAVKLENVKTKHPQLLYESKLYRVLQGGTGIPDIRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHCKSFLHRDIKPDNFLMGLGRRANQVYCIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYERISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLAAPPARAVGPAAGTSSAMPPAVNNADRQTGEEEGRPPPGLISGDSTRRRMSGTTSNTVNISRQKNPVTMDAALNKEAMLSKPNVLGQSSGSRRAGVSSSRDAFAGSDRTTEVNPGMRKITSGRNASSHVKNYESAVKGIESLQLENEKRAHY 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00422 452 MobiDBLite consensus disorder prediction 381 406 - -
Viun9g00422 452 MobiDBLite consensus disorder prediction 413 428 - -
Viun9g00422 452 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Viun9g00422 452 MobiDBLite consensus disorder prediction 346 366 - -
Viun9g00422 452 CDD STKc_CK1_delta_epsilon 8 282 - -
Viun9g00422 452 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Viun9g00422 452 MobiDBLite consensus disorder prediction 379 428 - -
Viun9g00422 452 FunFam Putative Casein kinase I 1 85 - -
Viun9g00422 452 MobiDBLite consensus disorder prediction 306 366 - -
Viun9g00422 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Viun9g00422 452 Pfam Protein kinase domain 10 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00422 452 Gene3D Transferase(Phosphotransferase) domain 1 1 326 - -
Viun9g00422 452 FunFam Casein kinase I isoform delta-like 1 308 - -
Viun9g00422 452 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00422 452 PANTHER CASEIN KINASE-RELATED 9 360 - -
Viun9g00422 452 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00422 Viun-Chr9 3029740 3038249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00422 7 223 EF-hand Containing Proteins AT2G17890 24.889 4.26e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Viun9g00422 Pkinase 8.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00422 K02218 - gmx:100786777 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00422 9 3029740 3038249 Viun9g00422 9 3029740 3038249 ECH
Viun3g05380 3 59968298 59973486 Viun9g00422 9 3029740 3038249 PCT