Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00417 ATGGATGTTTCCGGGTGCGAGTCCCTTCAGAAAGTGAAAGCAAAGGAACCAAAAAGGATTGGTCATGAAAACGGCATGGTTTTGGTGAAGAAAGAAGAAGAAGAAGATGATGATGAAGATGATGAGGAGTGGGTTCCACAACCGTTCGTGAAGAAGATATTGAAAATGGTGGAAGATGAGAGCTTGGACCCAATTGTGTCGTGGGGTGAAGGGCGTTGCAGTTTCGTGGTGTGGGATTCTGCTAAGTTCAGCAAAACCATTCTTCCACACTACTTCAAGCACAGTAACTTCTCCAGCTTCCTTCGCCAACTCAACAACTATGGGTTTAAGAAGGTTAATCCAAGGCGTTGGGAGTTTGCACGCGAAGGTTTTGAAGCAGGAAAAAGGCATTTACTGAAAAGTATCGTGAGAAGAGGAAGAAAGAAACGACTTCAAGGTGAAGTTGAGGAGCTGAAGAAGGAGAAGAACAAGTTAGCACTGGAGATTCTGAAGCTCACACAGCGGCTTAAGAATTCACAGGTTCAACTTAACAGTGTTGAGGAACGGCTTCGGTATGTTGAGTTGAAGCAGTATCAGACGTTGGATTTTCTGACCAGAATGGTTCAAGTGCCTGGTTTTGTCGAGCGATTGGTTCACAAGGTGCAGCAGAAAGATGGAGCAGACATGGTGAAGAGATGCAGATTTTTGGGACCTCAGTACCATAAGGGCACAAACAATAGCTCAAACTTTGGTTATTATAGACAGGAAGGTTGTGAACAACATGGTATCTTGTCGGAGACTACGAACACAGGACATGGTTATGATACTGTGTTAGAAGAATTACTGAGTGAGAGTTTTGATGAGGATGTAAATGTAAATGTGAATGAGTCGAGTATATATCTTGAGTTGGAGAGTTTGGTTGGATCCACAAGTGATTGA 918 0.4336 MDVSGCESLQKVKAKEPKRIGHENGMVLVKKEEEEDDDEDDEEWVPQPFVKKILKMVEDESLDPIVSWGEGRCSFVVWDSAKFSKTILPHYFKHSNFSSFLRQLNNYGFKKVNPRRWEFAREGFEAGKRHLLKSIVRRGRKKRLQGEVEELKKEKNKLALEILKLTQRLKNSQVQLNSVEERLRYVELKQYQTLDFLTRMVQVPGFVERLVHKVQQKDGADMVKRCRFLGPQYHKGTNNSSNFGYYRQEGCEQHGILSETTNTGHGYDTVLEELLSESFDEDVNVNVNESSIYLELESLVGSTSD 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00417 305 ProSitePatterns HSF-type DNA-binding domain signature. 88 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun9g00417 305 PRINTS Heat shock factor (HSF) domain signature 49 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun9g00417 305 PRINTS Heat shock factor (HSF) domain signature 100 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun9g00417 305 PRINTS Heat shock factor (HSF) domain signature 87 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun9g00417 305 Pfam HSF-type DNA-binding 49 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun9g00417 305 Coils Coil 141 182 - -
Viun9g00417 305 SUPERFAMILY "Winged helix" DNA-binding domain 46 138 IPR036390 -
Viun9g00417 305 SMART hsfneu3 45 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun9g00417 305 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 45 239 IPR027725 -
Viun9g00417 305 FunFam Heat stress transcription factor B-4 41 139 - -
Viun9g00417 305 Gene3D - 41 139 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00417 Viun-Chr9 2996371 2997380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00417 46 211 HSF AT2G26150 47.849 6.68e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Viun9g00417 HSF_DNA-bind 1.9e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00417 K09419 - gmx:100818430 235.343