Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00412 ATGCACCCCATGGAAAATGTCTTCTCTCTTCCTGTAGCCGCCAGGGCTGATTTTATCCAATTTCTGCTGCAGTCTTTTGGCTGCAGCTACATCTGTCTATGGGCATATGATTCTATTTCACCCAATCGTTTGTGCTTCTTGGATGGTATCTACAATGTAACAAACGACCAACCAGGTTCTAGTTTGGGGACTGTGGCACAACAGCTTTTCAGACAGTTCAGAACCTTAACATTTGATGTTAATGATGACCGTGTTCCTGGACTAGCTTTTCGGAACCAGCGTCCCTACCTAGAGTTGCAACGATTGGAACTTCTGAGACTTGCATCAACAGAAATACAAACACAATTCTTTCAGGAGGCAAGGATTAAGAGTGCTGTTTTCATGGGGTGTAACAAAGGAGAAATTGAGCTCGGTTTCTTAAACATGTCCCAAGTTGACATTCAAACAGCACTTAGAAGTTTGTTTCCTGGAGAATTTTCCACTGGACAGTCTCAGCAAATTGATCAAAACCCTCCTACATCATCTTCATCTTCTTTGAGATCAATATCCACAGGTAGCCCTGAATACTCATCTCTTCTGTTCAGTATTCCAGGCACTTCACAATCCCACTTTCCTGAAACACTTGGAGGAGCAAGAGTGTTACCAATGCAGCCAGTGCCAAACACAGCCACTGGTCCTCACCAACAAGCCATTGAAGCACTGGCACAAGCCCCTCTAACCCAATTCCCCACACCAGAAACCGAACATTATGCAATCATGAGAGCAATTCTCCATGTTATATCTCCAACTTCTCATCACCACCAAAACTTGCCCTTTGCTCCAGTGGTTCATCCAGATGCCAGTGCTTTCCAGAGATACAGATCAGACATTGGCCCCAACATGGCTTCCAATATCAGAAAGCAAAGCTTCATGAAGAGATCTTTAACATTCTTTAGAAACTTGAATTTCATGAGAATGAGAGAACGCATTCAAGCAACTTCCCGTCCCACTAATACCCAGCTGCATCATATGATATCAGAGAGAAGAAGGCGTGAGAAACTAAACGAGAATTTCCAAGCACTTAGAGCCTTACTTCCTCCGGGAACAAAGAAAGATAAAGCGTCTATACTAATAGCAGCAAAGGACACATTGAGCTCTCTGATGGCTGAAGTTGATCAACTAAGCAAAAGGAATGAGGGTTTGACATCATTTTTGCCATCCAAAGAACCTACAACTGAAGAAAGCAAGGCTAGATTATCTCCGAATGAAAGATTAAGTGTCCGAGTTTCTCATGTACCCGAATCAAGCTCGTCACAGGAGCGAATGGTGGAGTTGCAAGTGAATGTGAGAGCACAGGTTTCTCAAATTGATTTGTCAATCTGCTTATTGGAATTCTTAAAACAGTGTCTCAGCGTGAGCTTGGTTTCCATGGACGCAAACACCCACATTGCAGAGGGGAATAATAATGTCATTCATCAACTTACCTTCAGATTAAGGATTATTCAGGGAAGTGATTGGGACGAGTGTACCTTCGAGGAAGCTGTGAGAAGAGTGGTTGGTGACTTGGCACAGTACCAAGAGGACCAATAA 1569 0.4334 MHPMENVFSLPVAARADFIQFLLQSFGCSYICLWAYDSISPNRLCFLDGIYNVTNDQPGSSLGTVAQQLFRQFRTLTFDVNDDRVPGLAFRNQRPYLELQRLELLRLASTEIQTQFFQEARIKSAVFMGCNKGEIELGFLNMSQVDIQTALRSLFPGEFSTGQSQQIDQNPPTSSSSSLRSISTGSPEYSSLLFSIPGTSQSHFPETLGGARVLPMQPVPNTATGPHQQAIEALAQAPLTQFPTPETEHYAIMRAILHVISPTSHHHQNLPFAPVVHPDASAFQRYRSDIGPNMASNIRKQSFMKRSLTFFRNLNFMRMRERIQATSRPTNTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILIAAKDTLSSLMAEVDQLSKRNEGLTSFLPSKEPTTEESKARLSPNERLSVRVSHVPESSSSQERMVELQVNVRAQVSQIDLSICLLEFLKQCLSVSLVSMDANTHIAEGNNNVIHQLTFRLRIIQGSDWDECTFEEAVRRVVGDLAQYQEDQ 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00412 522 CDD bHLH_AtbHLH_like 336 388 IPR045239 -
Viun9g00412 522 Gene3D - 330 402 IPR036638 GO:0046983
Viun9g00412 522 Pfam Helix-loop-helix DNA-binding domain 335 380 IPR011598 GO:0046983
Viun9g00412 522 MobiDBLite consensus disorder prediction 393 418 - -
Viun9g00412 522 SMART finulus 337 386 IPR011598 GO:0046983
Viun9g00412 522 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 108 513 IPR044658 -
Viun9g00412 522 Coils Coil 337 357 - -
Viun9g00412 522 Coils Coil 370 390 - -
Viun9g00412 522 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 331 380 IPR011598 GO:0046983
Viun9g00412 522 MobiDBLite consensus disorder prediction 160 183 - -
Viun9g00412 522 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 331 396 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00412 Viun-Chr9 2952610 2956689 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00412 15 517 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 39.813 3.61e-95 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun9g00412 HLH 6.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00412 - - gmx:100807098 809.29