Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00411 ATGAGTCGTTTGTGCTTCTTGGATGGTATCTACAATGTAACAAACGACCAACCAGGTTCTAGTTTGGGGACTGTGGCACAACAGCTTTTCAGACAGTTCAGAACCTTAACATTTGATGTTAATGATGACCGTGTTCCTGGACTAGCTTTTCGGAACCAGCGTCCCTACCTAGAGTTGCAACGATTGGAACTTCTGAGACTTGCATCAACAGAAATACAAACACAATTCTTTCAGGAGGCAAGGATTAAGAGTGCTGTTTTCATGGGGTGTAACAAAGGAGAAATTGAGCTCGGTTTCTTAAACATGTCCCAAGTTGACATTCAAACAGCACTTAGAAGTTTGTTTCCTGGAGAATTTTCCACTGGACAGTCTCAGCAAATTGATCAAAACCCTCCTACATCATCTTCATCTTCTTTGAGATCAATATCCACAGGTAGCCCTGAATACTCATCTCTTCTGTTCAGTATTCCAGGCACTTCACAATCCCACTTTCCTGAAACACTTGGAGGAGCAAGAGTGTTACCAATGCAGCCAGTGCCAAACACAGCCACTGGTCCTCACCAACAAGCCATTGAAGCACTGGCACAAGCCCCTCTAACCCAATTCCCCACACCAGAAACCGAACATTATGCAATCATGAGAGCAATTCTCCATGTTATATCTCCAACTTCTCATCACCACCAAAACTTGCCCTTTGCTCCAGTGGTTCATCCAGATGCCAGTGCTTTCCAGAGATACAGATCAGACATTGGCCCCAACATGGCTTCCAATATCAGAAAGCAAAGCTTCATGAAGAGATCTTTAACATTCTTTAGAAACTTGAATTTCATGAGAATGAGAGAACGCATTCAAGCAACTTCCCGTCCCACTAATACCCAGCTGCATCATATGATATCAGAGAGAAGAAGGCGTGAGAAACTAAACGAGAATTTCCAAGCACTTAGAGCCTTACTTCCTCCGGGAACAAAGAAAGATAAAGCGTCTATACTAATAGCAGCAAAGGACACATTGAGCTCTCTGATGGCTGAAGTTGATCAACTAAGCAAAAGGAATGAGGGTTTGACATCATTTTTGCCATCCAAAGAACCTACAACTGAAGAAAGCAAGGCTAGATTATCTCCGAATGAAAGATTAAGTGTCCGAGTTTCTCATGTACCCGAATCAAGCTCGTCACAGGAGCGAATGGTGGAGTTGCAAGTGAATGTGAGAGCACAGGTTTCTCAAATTGATTTGTCAATCTGCTTATTGGAATTCTTAAAACAGTGTCTCAGCGTGAGCTTGGTTTCCATGGACGCAAACACCCACATTGCAGAGGGGAATAATAATGTCATTCATCAACTTACCTTCAGATTAAGGATTATTCAGGGAAGTGATTGGGACGAGTGTACCTTCGAGGAAGCTGTGAGAAGAGTGGTTGGTGACTTGGCACAGTACCAAGAGGACCAATAA 1449 0.4313 MSRLCFLDGIYNVTNDQPGSSLGTVAQQLFRQFRTLTFDVNDDRVPGLAFRNQRPYLELQRLELLRLASTEIQTQFFQEARIKSAVFMGCNKGEIELGFLNMSQVDIQTALRSLFPGEFSTGQSQQIDQNPPTSSSSSLRSISTGSPEYSSLLFSIPGTSQSHFPETLGGARVLPMQPVPNTATGPHQQAIEALAQAPLTQFPTPETEHYAIMRAILHVISPTSHHHQNLPFAPVVHPDASAFQRYRSDIGPNMASNIRKQSFMKRSLTFFRNLNFMRMRERIQATSRPTNTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILIAAKDTLSSLMAEVDQLSKRNEGLTSFLPSKEPTTEESKARLSPNERLSVRVSHVPESSSSQERMVELQVNVRAQVSQIDLSICLLEFLKQCLSVSLVSMDANTHIAEGNNNVIHQLTFRLRIIQGSDWDECTFEEAVRRVVGDLAQYQEDQ 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00411 482 MobiDBLite consensus disorder prediction 353 378 - -
Viun9g00411 482 Pfam Helix-loop-helix DNA-binding domain 295 340 IPR011598 GO:0046983
Viun9g00411 482 Gene3D - 290 362 IPR036638 GO:0046983
Viun9g00411 482 Coils Coil 330 350 - -
Viun9g00411 482 CDD bHLH_AtbHLH_like 296 348 IPR045239 -
Viun9g00411 482 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 291 340 IPR011598 GO:0046983
Viun9g00411 482 Coils Coil 297 317 - -
Viun9g00411 482 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 68 473 IPR044658 -
Viun9g00411 482 MobiDBLite consensus disorder prediction 120 143 - -
Viun9g00411 482 SMART finulus 297 346 IPR011598 GO:0046983
Viun9g00411 482 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 291 356 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00411 Viun-Chr9 2952462 2956689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00411 4 477 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 39.208 2.19e-84 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun9g00411 HLH 6.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00411 - - gmx:100807098 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00411 9 2952462 2956689 Viun9g00411 9 2952462 2956689 ECH
Viun3g05371 3 59913059 59916242 Viun9g00411 9 2952462 2956689 PCT