Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00404 ATGGGGGTGATCTTGGCACTGATTCTGCAGCTCTTGAAGCTCTGCGTCATTGGCTTTGTTGTGGCATTCCAAGGATCTCAAGGGTCTATTATATCCCCATCTCCAGCATTCCTTCCAGTCATTCATCCTACTGGAGAAGCACCTGCTCCTATCCATCTTGGACTGTCATGGGGAAGCAGTCCACCAAGATCACCTTCAGATGGGTTTGTTATATCCCCATCTCCAAAAACCATACATGTGAATCCTTCCCCCAGTGAAGCACCTGGTTTTATACACCCAAAAGAACCATGGAGAATCATTGCACCAAGCCCTCAAGAAGTACCAAATGGGCCATTTTTTTCCCATCCGGTTACATTTCCACCTCCTAAATCAGCTCCAACTCCAGAGAAAACGAGAGAATCTGAACCATCCATGTCTCCTAGTCCTGCTGCAAGCACCATAACATCATCATATAATGGTGCTCCTGGACCATCAACTGCAGAAGGGAATGTTTCACCATCCATACAATTAAGTCCACCTCAAAGCAAAACACCTGCTTTTAGTCCTCCTGTTTTCACACCAATTTCTCCAGCTCCCATTGCAGTACCTTCAGGGAATTTGACAAAAAATTCACCAGTCAGCCAACCAACTGAACATGGAAGTTTGCCTCCTAAGATTGATGAGAGGAATAAGAGTCACAAGCCTGAGCCAGCTTTTCCAGCTATAGTTCCAATACCTTCTACACAGTTGCCCAAATATTCACCAGTTAGCCAACCAAATGAAAATGGAAGTTTGCCTCATAGAGATGGTGCAAATAATAGTCACATCCCCGAGCCAATTTCACCAGCCCCTTTAGTATTCAGTTTTCCTGAACATCCACCAGTGAGTCAGCCAACTGAACATGGAAGTTTGCCTCCAACTGTTCCCAGAGGGGATATAAACACAGGTCACACATTGGAGCCAGTTTCACACGCCCCAGTTGCACAACCTCCTACAAATTTGCCAAAAAATTCATCTGTTAGTCAACCAACTCATGGAAATTTCCCACCTGATCTTCACAATGGAACTGCAAATAATGATCACACTCACACCCCAGCACAAACGATGTCACCATCAGTTACACCATCAAGTCCATTTCCAGTAGATCCACCATTAGTCCACCCAGTCATACCAGCAGCATCTCCATCCAAATCACCAGCACCTACTGTCTCTCCTGCATTGACTCCTTCCAGAAGCTTTAGTTGGAAAAAAGGTGGAGAACCAGTTTCTGCACCAGTGTACAAAACACCAAAGCCACTACCGGCTATAGTACATTCCCAGACTCAAGCACCTGTTGTCTCTCCAGCATTAACACCTTCTAGAAGCTTCAATTGGAAAAGAGATGGAGAACCAGTTTCTGCTCCTCCATACAAAACACCAAAACCACTACCCGCTATAGTACATTCCACTACTCAAGCTCCTTCTTCTGCACATGTAGCAAGGCAATTTCACTATGCTCCTGAACCATCTCCTAACAAAGATTACCCTCCTGCATCTTCACCTTCAGCCACATTCTATAAGCATCACCACACAAGGAGCACAATCAACAGCCCTGCTCCTGCGTCATCATATTCAGTTTCTCCTTCCACTTTAAAACACCAAGATGAACCAATTCCTCCCTCACGGTTGCCAGCAAGTAGGCATAGACAACATGCTCCATCACCATTGAACACAGGTTCGACAGTTTCCCCGTTTCAGTCACCAGTAAGCCAGATTTCACCAGCTCCTTCTCCATCCTTCAAAATACTTCCCCATTCAACCAAAATTCCAATTCATCCTCCTGAGGTATCTCCTTTAAGACCTTCTTCCAAGAGACCTAAGAAGCCAGTCCCACCTCATATTCAAGCACTACCACCGCCACCTCCCAATGAAGATTGTATATCACTGGTTTGCTCAGATCCTTATACAAGTACTCCACCTGGTGCACCTTGCAAATGTGTGTGGCCCATGAAAGTCAGTCTTCGCCTTAGTGTTTCTTTGTATACTTTCTTCCCTTTGGTTTCAGAGTTTGCTTCTGAAATTGCCATTGGGGTTTTCATGAAGCAAAGTCAAGTTCGCATTATGGGAGCTGATGCAGCAAACCTGCAACCTGATAAAACTATTGTATTCATTGATTTGGTACCACTTGGGGAAAATTTTGATAACACTACAGCCTTTTTAACTTCTGAGAGATTTTGGCATAAACAGGTTGCTATAAAGACTTCTTACTTTGGTGATTATGACGTATTATATGTGAGCTATCCAGGTTTGCCTCCATCTCCTCCTTTACCTCCTTCAAGCATTACAATTGTTGATGGCGGTCCATATTCGGGTGGTGGCAATAACAGTAGGACCATAAAGCCCCTTGGGGTTGACATATCAAAGAGGCAGCATAAAGGTGGAATTAGCAAGGGCATGATTGCTATTATTTCTCTCTCAGGTTTTCTAGTAGTTGTTTTATGCTTTGCTGCTGCTTGGGCCTTGTTCAAGTTCAGAAATCATTCAAGTAAACTGGCATCAACCCCACAAGTTGTGTCTCCTTCACTTACCAAAGCACCAGGTGCTGTCTCAGCAGTTGGAGGCAGGCTTGCTTCAGCTTCAACATCATTCCGGTCTAGCATTGCTGCTTATACAGGATCTGCTAAGACTTTCAGCATGAATGAGATTGAGAAAGCCACAGATAATTTTCATGACTCCAGAGTACTTGGAGAAGGTGGTTTTGGGCGTGTTTATAGTGGCATACTTGAAGATGGGACAAAAGTGGCAGTCAAGGTTCTGAAAAGAGAGGATCATCATGGTGACCGTGAATTCCTATCTGAAGTAGAGATGCTTAGCCGGCTTCACCATAGAAATTTGGTTAAATTGATTGGTATTTGCGCAGAGGTCAGCTTCCGGTGCCTGGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTGCATGGGATGGACAAGGAAAACAGCCCCCTTGATTGGAGTGCTCGGATAAAGATAGCACTTGGGGCTGCTCGTGGACTGGCTTATCTGCATGAAGATTCAAGTCCTCATGTCATACATAGAGACTTCAAGTCTAGTAATATCTTGCTGGAAGATGATTTTACTCCAAAAGTATCCGATTTTGGATTAGCCCGAACAGCAGCTGATGAAGAGAACAGACACATATCAACACGAGTAATGGGAACTTTTGGTTATGTGGCTCCGGAGTATGCAATGACAGGCCATCTTCTTGTGAAGAGTGATGTTTACAGCTATGGTGTTGTCCTCCTTGAGCTCTTGACAGGAAGAAAACCAGTAGACATGTCACGACCTCCCGGTCAAGAGAATCTGGTTGCATGGGCTCGTCCATTGCTCTCAAGTGAAGAAGGAGTGGAAGCAATAACAGATCCATCTCTTGGACCTGATGTGGCTTCTGATAGTGTGGCTAAAGTTGCAGCCATTGCTTCTATGTGTGTACAACCAGAGGTTTCAGACCGTCCATTTATGGGTGAGGTTGTTCAGGCTTTAAAACTAGTGTGCAATGAATGTGATGAGGCAAGAGAAACAGGCTCGAGTTCTACCTCTGTTGATTTCAGTCCTTCTAGACAAGTATCAGACAATTTTCAAGGCCAATCTTCAGCCACCAATTATGATTCTGGAGTTGATATTGAAAATGGGCTGTTGGCATCAGAGTTATTCAGCTCAGCATCCGCAAGATATGGAAAGCGAGTGTCAGGATCATTTAGAAGACATTCTTACTCAGGTCCTCTTAGTACCGGAAGAAGCAAACGGTTATGGCAGATAATTAGAAAGCTTTCTGGTGGCAGTGTCAGTGAACATGGAACTATGTTCAAGTTATGA 3837 0.4438 MGVILALILQLLKLCVIGFVVAFQGSQGSIISPSPAFLPVIHPTGEAPAPIHLGLSWGSSPPRSPSDGFVISPSPKTIHVNPSPSEAPGFIHPKEPWRIIAPSPQEVPNGPFFSHPVTFPPPKSAPTPEKTRESEPSMSPSPAASTITSSYNGAPGPSTAEGNVSPSIQLSPPQSKTPAFSPPVFTPISPAPIAVPSGNLTKNSPVSQPTEHGSLPPKIDERNKSHKPEPAFPAIVPIPSTQLPKYSPVSQPNENGSLPHRDGANNSHIPEPISPAPLVFSFPEHPPVSQPTEHGSLPPTVPRGDINTGHTLEPVSHAPVAQPPTNLPKNSSVSQPTHGNFPPDLHNGTANNDHTHTPAQTMSPSVTPSSPFPVDPPLVHPVIPAASPSKSPAPTVSPALTPSRSFSWKKGGEPVSAPVYKTPKPLPAIVHSQTQAPVVSPALTPSRSFNWKRDGEPVSAPPYKTPKPLPAIVHSTTQAPSSAHVARQFHYAPEPSPNKDYPPASSPSATFYKHHHTRSTINSPAPASSYSVSPSTLKHQDEPIPPSRLPASRHRQHAPSPLNTGSTVSPFQSPVSQISPAPSPSFKILPHSTKIPIHPPEVSPLRPSSKRPKKPVPPHIQALPPPPPNEDCISLVCSDPYTSTPPGAPCKCVWPMKVSLRLSVSLYTFFPLVSEFASEIAIGVFMKQSQVRIMGADAANLQPDKTIVFIDLVPLGENFDNTTAFLTSERFWHKQVAIKTSYFGDYDVLYVSYPGLPPSPPLPPSSITIVDGGPYSGGGNNSRTIKPLGVDISKRQHKGGISKGMIAIISLSGFLVVVLCFAAAWALFKFRNHSSKLASTPQVVSPSLTKAPGAVSAVGGRLASASTSFRSSIAAYTGSAKTFSMNEIEKATDNFHDSRVLGEGGFGRVYSGILEDGTKVAVKVLKREDHHGDREFLSEVEMLSRLHHRNLVKLIGICAEVSFRCLVYELIPNGSVESHLHGMDKENSPLDWSARIKIALGAARGLAYLHEDSSPHVIHRDFKSSNILLEDDFTPKVSDFGLARTAADEENRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSRPPGQENLVAWARPLLSSEEGVEAITDPSLGPDVASDSVAKVAAIASMCVQPEVSDRPFMGEVVQALKLVCNECDEARETGSSSTSVDFSPSRQVSDNFQGQSSATNYDSGVDIENGLLASELFSSASARYGKRVSGSFRRHSYSGPLSTGRSKRLWQIIRKLSGGSVSEHGTMFKL 1278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00404 1278 MobiDBLite consensus disorder prediction 369 383 - -
Viun9g00404 1278 MobiDBLite consensus disorder prediction 110 413 - -
Viun9g00404 1278 SUPERFAMILY Protein kinase-like (PK-like) 875 1168 IPR011009 -
Viun9g00404 1278 MobiDBLite consensus disorder prediction 510 540 - -
Viun9g00404 1278 MobiDBLite consensus disorder prediction 439 625 - -
Viun9g00404 1278 ProSitePatterns Protein kinases ATP-binding region signature. 901 923 IPR017441 GO:0005524
Viun9g00404 1278 MobiDBLite consensus disorder prediction 196 211 - -
Viun9g00404 1278 FunFam receptor-like serine/threonine-protein kinase ALE2 868 970 - -
Viun9g00404 1278 MobiDBLite consensus disorder prediction 131 175 - -
Viun9g00404 1278 Gene3D Phosphorylase Kinase; domain 1 867 970 - -
Viun9g00404 1278 ProSiteProfiles Protein kinase domain profile. 895 1171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00404 1278 CDD STKc_IRAK 901 1169 - -
Viun9g00404 1278 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1017 1029 IPR008271 GO:0004672|GO:0006468
Viun9g00404 1278 MobiDBLite consensus disorder prediction 176 190 - -
Viun9g00404 1278 MobiDBLite consensus disorder prediction 390 404 - -
Viun9g00404 1278 MobiDBLite consensus disorder prediction 243 262 - -
Viun9g00404 1278 MobiDBLite consensus disorder prediction 557 583 - -
Viun9g00404 1278 MobiDBLite consensus disorder prediction 1181 1205 - -
Viun9g00404 1278 MobiDBLite consensus disorder prediction 323 368 - -
Viun9g00404 1278 FunFam Receptor-like serine/threonine-protein kinase ALE2 971 1187 - -
Viun9g00404 1278 Pfam Protein tyrosine and serine/threonine kinase 898 1168 IPR001245 GO:0004672|GO:0006468
Viun9g00404 1278 Gene3D Transferase(Phosphotransferase) domain 1 971 1192 - -
Viun9g00404 1278 PANTHER OS01G0750732 PROTEIN 624 1193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00404 Viun-Chr9 2870468 2880138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00404 286 1274 Receptor kinase-like Gene Family AT5G56890 53.462 0.0 880
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Viun9g00404 PK_Tyr_Ser-Thr 3.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00404 - - gmx:100802309 2001.48