Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00400 ATGCATGAACCAATGATACCAACTTATCGTTATTCAGTGGTGTCTTCTCCTATGTCTATAGATCTCAATGAAGATCAAGATCATACACACACTCTCTTCAGCACAATCCATCAAGCCTCTTCTTCATCTTCTTCTTTATCTACTTCTGTTCTCTTCAACCCAGATCAGGATCAAGGACGATTTTGCTACTGTGAATCAAAACACCTTCAAGAGGCCCAGAAGATTGTCTGTTTCAGTGGATCATGGGATAATCCAGCAGAAAAGATTGAAAACGGAAGTGATCTCAAGCTTAGACTTTGGAAGAAAGAAGAGTGTGACGGTCTTCTAGGCGAAGACAGTTCAACTAACTGGATGCCTCCAAAGATGAGAATGGTGCGGAAAATTATGGTTTCAGATCAAACAGTTTCTCATATAGCAGACATCTCTAACTCTAAGCAGATCAAGGCTAAAGAGAAAAACCCAACACTGTCACAGCTGGTAACTGATGATAGTAACTATAACTCTTCTTCAAACAAGAACAGTGCCACTGCTAGGGTTTGTGTCGATTGCCACACCAGTAAGACCCCTCTCTGGAGGACTGGACCAACAGGCCCAAAGTCACTTTGCAATGCTTGTGGAATTCGACAAAGGAAGGCAAGACGCGCCATTGCTGCTGCAGCTGCAACAACAACAGGAAATGGAACAAATAGGTCGGAGGCTAAGAAATCTGAAGCGAGGAAGGGGAAAAAATTGCGTAGCAAAGGGAAAAAGTCCAAAACTGGGGGTGCACCAGTACCATTGAAAAAGAAGCATAAACCTGCGAAGCATAGAAAGAAGTTCGGTGCTTTTGAGGATTTGTCAGTAAGATTCCAACAAGTTTTTCCTCAGGATGAGAAAGAAGCTGCAATCTTGCTCATGGCTTTATCTCATGGATTACTTCATGGCTTCCCCTCAGATCGCTACCTCTCTTAG 951 0.4301 MHEPMIPTYRYSVVSSPMSIDLNEDQDHTHTLFSTIHQASSSSSSLSTSVLFNPDQDQGRFCYCESKHLQEAQKIVCFSGSWDNPAEKIENGSDLKLRLWKKEECDGLLGEDSSTNWMPPKMRMVRKIMVSDQTVSHIADISNSKQIKAKEKNPTLSQLVTDDSNYNSSSNKNSATARVCVDCHTSKTPLWRTGPTGPKSLCNACGIRQRKARRAIAAAAATTTGNGTNRSEAKKSEARKGKKLRSKGKKSKTGGAPVPLKKKHKPAKHRKKFGAFEDLSVRFQQVFPQDEKEAAILLMALSHGLLHGFPSDRYLS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00400 316 ProSiteProfiles GATA-type zinc finger domain profile. 174 210 IPR000679 GO:0006355|GO:0043565
Viun9g00400 316 Gene3D - 175 273 IPR013088 GO:0006355|GO:0008270
Viun9g00400 316 Pfam GATA zinc finger 180 213 IPR000679 GO:0006355|GO:0043565
Viun9g00400 316 MobiDBLite consensus disorder prediction 240 270 - -
Viun9g00400 316 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 175 216 - -
Viun9g00400 316 ProSitePatterns GATA-type zinc finger domain. 180 205 IPR000679 GO:0006355|GO:0043565
Viun9g00400 316 SMART GATA_3 174 225 IPR000679 GO:0006355|GO:0043565
Viun9g00400 316 CDD ZnF_GATA 179 209 IPR000679 GO:0006355|GO:0043565
Viun9g00400 316 MobiDBLite consensus disorder prediction 216 270 - -
Viun9g00400 316 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 5 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00400 Viun-Chr9 2800578 2802261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00400 113 308 C2C2-Gata Transcription Factor Family AT4G26150 37.004 2.59e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun9g00400 GATA 4.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00400 - - vun:114162648 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05345 3 59757412 59759225 Viun9g00400 9 2800578 2802261 PCT