Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00391 ATGTCTCCCAGAATACTCCAAGAAGCTTCACCTTCTACCAAGCCAGAGCACAAATCTGGAGGAACATTGTTTTACTTCCTAGGAGGAATTGTTGTGCTAGCCATAGTGTTGATTTTTTTTTACGTACTTGTACTTCGGAAGCGTATCAAACGGTCACCACAGGGTATGACAGAACAGAAAGAGATTCGAAAACACATAGAATCAGCAGATATGATGAAGATGATATTTTCATCTAATCAACAGTCAGGGTCCAAGGAGTTCTTTAGTGGGAACCTTAGGACAATTAACTGCTTTGACTACCAGACATTGAAGAATGCAACCATGAATTTCCATGCAGATAATTTTCTTGGAAGTGGTGGATTTGGACCTGTTTACAAGGGAAAGTTGGCAGATGGAAGAGTGATTGCAGTTAAGAAATTGTCTCTCAACAAGTCTCAACAGGGAGAAAAAGAATTTCTGGTAGAGGTGAGAACAATCACTAGTATCCAACACAAAAATCTGGTTCGTCTTCTTGGATACTGCATAGATGGACCGCAAAGGATACTTGTCTATGAATACATGAAAAACAGAAGTTTGGACCTCTTTATTCATGAAAACAGTGATCAATTTCTGAATTGGAGAACTAGATTCCAAATTATTCTGGGAGTAGCCAGAGGACTACAATACCTTCACGAGGATTCACACCAAAGAATTGTTCACCGAGACATCAAAGCAAGCAACATTCTTCTTGATGACAAGTTTCAGCCAAAGATTGGGGACTTTGGGCTAGCAAGATTTTTCCCGGAAGACCAAGCTTATCTTAGCACACAGTTCGCTGGAACACTAGGTTACACTGCTCCTGAATATGCCATTAGAGGGGAATTATCAGAAAAAGCAGATATCTATAGTTTTGGAGTTCTCTTGCTTGAGATAATCTGTTGCAGGAAAAACACAGACCACACTTTGGCATCAGAAATGCAGTACCTCCCTGAATATGCATGGAAACTGTACGAGAATGAAAGGATATTAGACATTGTAGATCCGAAGCTGCGAGAACATGGATTGGTAGAAAAGGATGTTATGCAAGCAATACACGTGGCTTTCTTATGTCTGCAGCCTGATGCACATTTGAGGCCTCCCATGTCAGAGATTGTGGCATTGTTGACATTCAAAATTGAAATGGTGACAACACCAATGAGGCCAGCATTTCTGGATCGAGGAGCAAGAAATGATGATGATGATGAGAAAGAACACAAGGGTTTAACATCTCCCATATAA 1257 0.4049 MSPRILQEASPSTKPEHKSGGTLFYFLGGIVVLAIVLIFFYVLVLRKRIKRSPQGMTEQKEIRKHIESADMMKMIFSSNQQSGSKEFFSGNLRTINCFDYQTLKNATMNFHADNFLGSGGFGPVYKGKLADGRVIAVKKLSLNKSQQGEKEFLVEVRTITSIQHKNLVRLLGYCIDGPQRILVYEYMKNRSLDLFIHENSDQFLNWRTRFQIILGVARGLQYLHEDSHQRIVHRDIKASNILLDDKFQPKIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLLLEIICCRKNTDHTLASEMQYLPEYAWKLYENERILDIVDPKLREHGLVEKDVMQAIHVAFLCLQPDAHLRPPMSEIVALLTFKIEMVTTPMRPAFLDRGARNDDDDEKEHKGLTSPI 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00391 418 Gene3D Phosphorylase Kinase; domain 1 67 186 - -
Viun9g00391 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Viun9g00391 418 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 16 401 - -
Viun9g00391 418 FunFam Cysteine-rich receptor-like protein kinase 10 74 186 - -
Viun9g00391 418 ProSiteProfiles Protein kinase domain profile. 110 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00391 418 SMART serkin_6 110 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00391 418 MobiDBLite consensus disorder prediction 398 418 - -
Viun9g00391 418 SUPERFAMILY Protein kinase-like (PK-like) 90 384 IPR011009 -
Viun9g00391 418 MobiDBLite consensus disorder prediction 396 418 - -
Viun9g00391 418 Gene3D Transferase(Phosphotransferase) domain 1 187 390 - -
Viun9g00391 418 CDD STKc_IRAK 116 382 - -
Viun9g00391 418 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 187 391 - -
Viun9g00391 418 Pfam Protein tyrosine and serine/threonine kinase 113 380 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00391 Viun-Chr9 2779691 2783303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00391 11 397 Receptor kinase-like Gene Family AT1G56120 42.894 7.47e-100 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun9g00391 PK_Tyr_Ser-Thr 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00391 - - gmx:100799624 696.041