Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00390 ATGGAAGATGATGAAGCATGCATCACCAGTCTTAGCCTTGGACTAGGAATGGGGGGCCATGTGCCGAAGAAGGAGAAGCAGAAACTCCCTTGTTTGGACCTAACGTTTCAGATTTGTCCAAAGGGGGAGAAAACCATTCACGTGGATAAACAACATCTTCTTCATGGTGATGATAAGGCAAAAGGGTTGTTATGTTTGAAGCATCCCAGTGAAAATAACAGCCCTGATAGCAGCAACAACAGCAGTAACGGCAGCAGAAAGAAACTGAAGCTTACGAAGGAGCAATCAGCCACCCTTGAAGATATTTTCAAGCTGCATAGCACTCTTAACCCCGCACAGAAGCAGGCACTCGCTGATCAATTGAATTTAAAACATAGACAGGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACGAAGCTGAAGCAAACAGAGGTGGATTGCGAGTTCCTGAAGAAATGCTGTGAGAAATTAACCGATGAGAATCTGAGACTGAAGAAGGAATTGCAAGAGCTGCGTGCACAGAAGATTGGAGCAAAACCATTGTACATTCAAGTGTCGAAGGCGACAACCTTGAACATTTGTTCATCGTGCGAGAAAGAATTGAAGCCGAATGAAGGGAAGAAAGGAGGCATTTCCGATGTGGTCCGAAAGAGCGTAGGGGTAAAGGGCATTTAG 678 0.4499 MEDDEACITSLSLGLGMGGHVPKKEKQKLPCLDLTFQICPKGEKTIHVDKQHLLHGDDKAKGLLCLKHPSENNSPDSSNNSSNGSRKKLKLTKEQSATLEDIFKLHSTLNPAQKQALADQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELRAQKIGAKPLYIQVSKATTLNICSSCEKELKPNEGKKGGISDVVRKSVGVKGI 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00390 225 CDD homeodomain 86 143 IPR001356 GO:0003677
Viun9g00390 225 SMART HOX_1 84 146 IPR001356 GO:0003677
Viun9g00390 225 MobiDBLite consensus disorder prediction 65 91 - -
Viun9g00390 225 MobiDBLite consensus disorder prediction 70 86 - -
Viun9g00390 225 Pfam Homeobox associated leucine zipper 142 175 IPR003106 GO:0006355|GO:0043565
Viun9g00390 225 Gene3D - 64 141 - -
Viun9g00390 225 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Viun9g00390 225 SMART halz 142 185 IPR003106 GO:0006355|GO:0043565
Viun9g00390 225 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 201 - -
Viun9g00390 225 SUPERFAMILY Homeodomain-like 69 143 IPR009057 -
Viun9g00390 225 Coils Coil 141 175 - -
Viun9g00390 225 Pfam Homeodomain 86 140 IPR001356 GO:0003677
Viun9g00390 225 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00390 Viun-Chr9 2767326 2768842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00390 74 200 Homeobox Transcription Factor Family AT4G37790 69.291 1.57e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun9g00390 Homeodomain 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00390 K09338 - gmx:100778922 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05334 3 59675498 59676821 Viun9g00390 9 2767326 2768842 PCT