Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00378 ATGAGTAGTTTCGTGAACGGTGCTTCGCCGATGAGGCAAGCGGTGGCGGAGAGGGAGAGTGATATTGAGGCTGGTCCTGCCACTCACCGCTCCACTGACCTCGAAGACGGAGATTTATCCGATCCGTTTGATATTGCCAGAACTAAGAACGCTTCCATTGAACGCCTCAGGCGATGGAGGCAAGCAGCGCTTGTGCTTAATGCTTCTCGTCGATTTCGTTATACCTTGGACTTGAAAAAAGAAGAAGAGAAGAAACAAATATTGAGAAAGATTAGAGCGCATGCACAAGCCATTAGAGCAGCTTATCTTTTCAAAGCAGCTGGTGGGGTGCCAGGGAATGAACCTATTAAACCTCCTCCGACCCCAATTGCTGGTGAATTTTCAATTGGGCAAGAACAACTTGCTTCAATTTCGAGGGAGCATGACACTGCTGCTCTGCAACAATATGGAGGGGTTGTAGGACTATCAGTTTTGTTGAAAACCAATTTAGAGAAGGGAATTCATGGTGATGATGCTGATTTACTGAAACGTAGGAATTCATTTGGTTCCAACAATTATCCTCGGAAAAAAGGAAGAGGTTTTCTGATGTTTATGTGGGATGCTTGTAAGGACCTGACCTTGGTTATTTTAATGGTAGCTGCAGCAGCTTCACTGGCACTTGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGCTATAAGTGACTATAAGCAGTCTCTTCAGTTTCGAGACCTAAATGAAGAGAAGAGAAATATACACCTGGAGGTTATTAGAAGCGGTAGAAGGGTTGAGATCTCTATATATGATATTGTTGTTGGGGATGTTATACCCCTAAATATTGGTGACCAGGTCCCTGCTGATGGAATTCTTATCACTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAAATTGTAAGTAGTTATTTTTTGATCTCCTACGAAGTTAGATTTTTATTTTCTGCAACATATTTTTGTTTTTCCTTTATGCAGGTCCATAAAGATTCTAAGGATCCTTTTCTGATGTCTGGATGTAAAGTTGCTGATGGCAGTGGAACAATGCTGGTCACTGGTGTTGGTATCAATACTGAATGGGGGCTTCTAATGGCTAGCATCTCAGAAGATACTGGTGAAGAAACACCATTGCAGGTTCGCTTAAATGGTGTAGCTACTTTCATTGGTATTGTTGGACTCTCTGTTGCTGTTGTCGTCCTGGTTGTGCTACTGGCTAGATATTTCTCTGGGCATACTGAAAACCCGGATGGTTCGCCTCAATTTAAAGCTGGCAAGACTAAAGTTGGTGATGCTGTTGATGGTGCAATTAAGATAGTAACTGTTGCGGTCACCATCGTTGTGGTTGCAGTTCCTGAGGGGCTCCCATTAGCAGTTACTTTAACGCTGGCCTACTCGATGAGAAAAATGATGGCAGATAAAGCTTTGGTAAGGAGGCTTTCTGCCTGTGAGACCATGGGCTCTGCCACAACCATTTGTAGTGATAAGACTGGCACATTGACTATGAATGAGATGACTGTGGTTGAGGCTTATGCTGGGGGTAAGAAAATTGATCCTCCCCACAAATTGGAGAATCCTATGCTTCGCTCCCTGCTCATTGAGGGTGTTGCGCTGAATACTAATGGTAGTGTTTATGCACCTGAGGGTGCTAGTGATGTTGAGGTTTCTGGATCACCAACGGAAAAGGCAATTTTACATTGGGGAATACAGCTTGGGATGAATTTTACGGATGCTAGATCCAGGACATCAATTATTCATGTTTTTCCATTCAATTCAGAGAAAAAGAGAGGCGGTGTTGCATTACAAACGGCCGACTCTAACATCCATATACACTGGAAAGGTGCTGCCGAGATAGTCCTAGCCTGCTGTACAGGCTATATTGATGCAAACGACCAGCTGGTGGGGATGGATGAAGAGAAGATGTCATTTTTCAAAAAGGCTATTGAAGACATGGCTGCTGATAGTTTACGTTGTGTTGCCATTGCATATAGATCATACGAAAAGGAAAAAGTTCCAACTAATGAAGAACTACTTGCTCACTGGTCTTTACCAGAGGATGATCTTATTTTACTGGCTATTGTTGGTCTTAAGGATCCTTGTCGACCTGGTGTCAAAGATGCAGTGCTACTTTGTCAAAAGGCTGGGGTTAAGGTGAAAATGGTAACTGGTGACAATGTGAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTGGTTCATTCGCTGATGCTACAGAACCAAACATCATTGAAGGAAAAACATTTCGTGGCTTATCAGATGCAGAGAGAGATGAAATTGCTGATAGGATATTGGTAATGGGACGGTCATCTCCCAATGACAAATTATTGCTAGTACAAGCATTGAGGAGGAAGGGTCATGTTGTAGCTGTAACTGGTGATGGAACAAATGATGCTCCTGCCCTTCATGAGGCTGATATAGGTCTTGCAATGGGTATCCAAGGAACAGAAGTTGCCAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTAAAGGTTGTCAGATGGGGACGATCTGTCTATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTAAATGTGGCCGCCTTAGTGATAAATGTTGTTGCTGCAGTTTCTACTGGTGATGTTCCATTAAATGCAGTGCAGCTTCTTTGGGTAAATCTTATCATGGACACCCTGGGGGCACTAGCCCTGGCAACGGAACCGCCAACTGATCACCTCATGGATCGATCTCCAGTTGGTCGAAGAGAGCCTCTCATAACAAATATTATGTGGAGGAATTTACTGATACAGGCAATGTACCAAGTGTCTGTCTTGCTTGTACTCAATTTCCGAGGTAGAAGCATACTGGGTTTGAACCATGACAACAATGTGCATGCAATCAAAGTGAAGAACACTTTGATATTTAACGCATTTGTTCTCTGTCAAATATTTAATGAATTTAATGCTCGAAAGCCAGATGAATACAACATATTTAAAGGAGTCACAAGAAACTACCTCTTTATGGGTATAATTGGATTAACTCTTGTGCTTCAGATCGTCATCATTGAATTCCTGGGCAAGTTTACAAAAACAGTGAGGCTAAATTGGAAGCAGTGGATCATCTGTGTTATCATCGGATTCATTAGTTGGCCTCTTGCTGTGATTGGGAAATTGATACCCGTGCCTACTACTCCTATCAATAACGTTTTCTCGAAATGTGGATCTTCTAAAAAGAAGGAACACGATGAATCTCAGTAG 3339 0.4226 MSSFVNGASPMRQAVAERESDIEAGPATHRSTDLEDGDLSDPFDIARTKNASIERLRRWRQAALVLNASRRFRYTLDLKKEEEKKQILRKIRAHAQAIRAAYLFKAAGGVPGNEPIKPPPTPIAGEFSIGQEQLASISREHDTAALQQYGGVVGLSVLLKTNLEKGIHGDDADLLKRRNSFGSNNYPRKKGRGFLMFMWDACKDLTLVILMVAAAASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEEKRNIHLEVIRSGRRVEISIYDIVVGDVIPLNIGDQVPADGILITGHSLAIDESSMTGESKIVSSYFLISYEVRFLFSATYFCFSFMQVHKDSKDPFLMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVVVLVVLLARYFSGHTENPDGSPQFKAGKTKVGDAVDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNEMTVVEAYAGGKKIDPPHKLENPMLRSLLIEGVALNTNGSVYAPEGASDVEVSGSPTEKAILHWGIQLGMNFTDARSRTSIIHVFPFNSEKKRGGVALQTADSNIHIHWKGAAEIVLACCTGYIDANDQLVGMDEEKMSFFKKAIEDMAADSLRCVAIAYRSYEKEKVPTNEELLAHWSLPEDDLILLAIVGLKDPCRPGVKDAVLLCQKAGVKVKMVTGDNVKTAKAIAVECGILGSFADATEPNIIEGKTFRGLSDAERDEIADRILVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSTGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRSPVGRREPLITNIMWRNLLIQAMYQVSVLLVLNFRGRSILGLNHDNNVHAIKVKNTLIFNAFVLCQIFNEFNARKPDEYNIFKGVTRNYLFMGIIGLTLVLQIVIIEFLGKFTKTVRLNWKQWIICVIIGFISWPLAVIGKLIPVPTTPINNVFSKCGSSKKKEHDESQ 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00378 1112 SFLD p-type atpase 500 876 IPR044492 -
Viun9g00378 1112 CDD P-type_ATPase_Ca_PMCA-like 174 957 - -
Viun9g00378 1112 Gene3D - 528 724 IPR023299 GO:0000166
Viun9g00378 1112 Gene3D - 515 869 IPR023214 -
Viun9g00378 1112 Gene3D - 51 106 - -
Viun9g00378 1112 FunFam Calcium-transporting ATPase 200 257 - -
Viun9g00378 1112 SUPERFAMILY HAD-like 516 929 IPR036412 -
Viun9g00378 1112 PANTHER CATION TRANSPORTING ATPASE 96 1088 - -
Viun9g00378 1112 FunFam Calcium-transporting ATPase 9 plasma membrane-type 372 542 - -
Viun9g00378 1112 SFLD C1.7: P-type atpase like 500 876 - -
Viun9g00378 1112 SUPERFAMILY Calcium ATPase, transduction domain A 270 391 IPR008250 -
Viun9g00378 1112 Pfam Cation transporting ATPase, C-terminus 909 1086 IPR006068 -
Viun9g00378 1112 Pfam haloacid dehalogenase-like hydrolase 515 838 - -
Viun9g00378 1112 NCBIfam HAD-IC family P-type ATPase 791 904 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun9g00378 1112 NCBIfam HAD-IC family P-type ATPase 459 542 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun9g00378 1112 MobiDBLite consensus disorder prediction 1 42 - -
Viun9g00378 1112 FunFam Calcium-transporting ATPase 51 107 - -
Viun9g00378 1112 NCBIfam calcium-translocating P-type ATPase, PMCA-type 359 1088 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Viun9g00378 1112 Pfam Ca2+-ATPase N terminal autoinhibitory domain 39 83 IPR024750 GO:0005516
Viun9g00378 1112 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 524 729 IPR023299 GO:0000166
Viun9g00378 1112 ProSitePatterns E1-E2 ATPases phosphorylation site. 520 526 IPR018303 -
Viun9g00378 1112 Pfam Cation transporter/ATPase, N-terminus 154 217 IPR004014 -
Viun9g00378 1112 SUPERFAMILY Calcium ATPase, transmembrane domain M 158 1088 IPR023298 -
Viun9g00378 1112 FunFam Calcium-transporting ATPase 841 1090 - -
Viun9g00378 1112 Gene3D - 200 1078 - -
Viun9g00378 1112 FunFam Calcium-transporting ATPase 528 724 - -
Viun9g00378 1112 Pfam E1-E2 ATPase 270 496 - -
Viun9g00378 1112 PRINTS P-type cation-transporting ATPase superfamily signature 316 330 - -
Viun9g00378 1112 PRINTS P-type cation-transporting ATPase superfamily signature 848 860 - -
Viun9g00378 1112 PRINTS P-type cation-transporting ATPase superfamily signature 739 749 - -
Viun9g00378 1112 PRINTS P-type cation-transporting ATPase superfamily signature 717 728 - -
Viun9g00378 1112 PRINTS P-type cation-transporting ATPase superfamily signature 824 843 - -
Viun9g00378 1112 PRINTS P-type cation-transporting ATPase superfamily signature 518 532 - -
Viun9g00378 1112 MobiDBLite consensus disorder prediction 16 42 - -
Viun9g00378 1112 FunFam Calcium-transporting ATPase 717 869 - -
Viun9g00378 1112 Gene3D - 173 394 - -
Viun9g00378 1112 SMART Cation_ATPase_N_a_2 151 222 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00378 Viun-Chr9 2646855 2666984 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00378 1 1095 Primary Pumps ATPases AT5G57110 72.810 0.0 1598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00378 K01537 - gmx:100792945 1903.26