Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00363 ATGGAGAATATGGAGAATATTGGTGAAGAGTACAAGCATTACTGGGAGACCACCATGTTCCTCCAGACCCAGGAGCTTGACAGTAATTGGGGGTTCGAGGAGGCTTTATCAGGGTACTACGATTCCAGTTCCCCTGATGGTGCTGCTTCAACTGCAGCATCCAAGAACATTGTTTCGGAGAGGAATAGGAGGAAGAAGCTCAATGAAAGGCTTTTCGCGCTTAGATCGGTGGTTCCTAATATCAGCAAGATGGATAAGGCTTCGATAATTAAGGATGCTATTGACTACATCCAGCATTTGCACGAGCAAGAGAAGATAATCCAAGCTGAGATCATGGATCTTGAATCTGGGATGCCAAAAAAGAGTGGTTCAAGCTATGACTTTGAGCAGGAACAGCTCCCTGTGGTGCTGAGGTCCAAGAAGAAGAGAACCGAGCAGATATACGATTCAGTCATTTCAAGAAACTCCCCAATTGAAGTCCTTGATCTGAGCGTGACCTACATGGGGGAGAAAATTGCTGTGGTGAGTTTGACATGCAGCAAAAGGACAGACACAATGGTGAAACTGTGCGAGGTGTTCGAATCTTTGAAGCTGAAGATCATCACTGCTAACATCACTTCGTTTTCAGGGAGGCTTCTGAAAACAGTCTTCATCGAGGCTAATGATGAAGATAAGTATCATTTGGAGATAAAGATCCAGACAGCCATTGCAGCTCTTAACGAACCTCTGAGTCCCATGAGCATTTAA 747 0.4485 MENMENIGEEYKHYWETTMFLQTQELDSNWGFEEALSGYYDSSSPDGAASTAASKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQHLHEQEKIIQAEIMDLESGMPKKSGSSYDFEQEQLPVVLRSKKKRTEQIYDSVISRNSPIEVLDLSVTYMGEKIAVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGRLLKTVFIEANDEDKYHLEIKIQTAIAALNEPLSPMSI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00363 248 SMART finulus 57 106 IPR011598 GO:0046983
Viun9g00363 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 100 IPR011598 GO:0046983
Viun9g00363 248 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 47 118 - -
Viun9g00363 248 Gene3D - 47 116 IPR036638 GO:0046983
Viun9g00363 248 Pfam Helix-loop-helix DNA-binding domain 58 101 IPR011598 GO:0046983
Viun9g00363 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 54 116 IPR036638 GO:0046983
Viun9g00363 248 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 47 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00363 Viun-Chr9 2503059 2509497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00363 4 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 62.100 3.21e-84 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun9g00363 HLH 2.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00363 - - vun:114163278 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00363 9 2503059 2509497 Viun9g00363 9 2503059 2509497 ECH
Viun3g05301 3 59409265 59415437 Viun9g00363 9 2503059 2509497 PCT