Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00362 ATGGCGACGGAGCAAACCAAATTCAGCGTGTTGTGCAGCCTCTTCACGTGGACGCAGCGGAGCAAGTCGGCGGCGAAGAAGCGCTCCAAGTTCCGCAAGTTCCTCGACGTCTTCTGCATTGACCGCAACTTCTTCCCTGCCATTCGCCTCATTCTCCCCAACCTCGATCGCGAGCGTGGCTCCTACGGCCTCAAGGAGTCCGTTCTCGCCACCTCTCTCATCGACGCCCTCGGCATCTCCCGTGACTCCCCCGATGCCCTCCGACTCATCAACTGGCGTAAGGGTGGCGCCGCCACCGGCGCTACAGCCGGAAATTTCGCCCTCGTCGCCGCCGAGGTGCTTCACAGCAGGCAAGGGACCGCTTCGGGAGGGTTGACGATAAAGGAGTTGAATGAGTTGCTTGACCGGTTGGCTTCCGGTGAAAACAGGGCTGAGAAAATTTTGGTTCTTTCTACCCTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATCCTGAAAGATCTAAAGCTGGGAATTAGTGAAAAAAGCATTTTTCATGAGTTCCATCCTGATGCAGAAGACTTGTTTAACGTTACCTGTGACTTAAAATTAGTATGTGAAAAGCTAAGGGATCGGAATCAGCGGCATAAGCGGCAGGATATTGAAGTTGGGAAAGCTGTGCGCCCCCAATTAGCTAAGAGAGTTGCTAATGCAACTGAAGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGTTGAATGCAAATTTGATGGCGACCGAATTCAAATTCATAAAAATGGAACTGAGATACATTTTTTCTCAAGGAACTTTATTGATCATTCTGAATATGCACATGCAATGTCAGAAATCATAATGCAAAATATTCTTGTAGATAGGTATGTTGCGTTTGATATCCTTTATTTCGGAGATACTAGTGTGATTCACCAATCTTTGAAGGAAAGACATGAGATATTATGTAAAGTTGTTAGGCCAATGAAGGGACGATTGGAAATTTTGGTACCTAATGCTGGTATCAACAGTCATCTTACTTCAGGTGAACCTTGTTGGTCATTTATTGCTCATAATGTTGATGAAGTTGAGAGGTTTTTCAAGGAAACCATTGAAAATAGAGATGAGGGAATTGTTTTAAAGGACCGCAGCTCTAAATGGGAACCTAGTGATCGTAGTGGGAAGTGGTTAAAATTGAAGCCTGAATACATTCAAGCTGGCTCTGATTTGGATGTACTTATCATAGGTGGCTACTATGGTTCTGGACGACGTGGAGGACAGGTTGCTCAATTCTTGGTTGGCCTTGCAGAACGTCCATCTCCAAATGCACAACCTAAGCGGTTTATATCCTTTTGCAGAGTTGGCACTGGACTCTCTGATGAGGAGCTTGACGTTGTAGTAACCAAACTAAAACCGTACTTCAGAAAGTATGAATATCCAAAGAAGAGGCCACCAAGTTTTTATCAAGTAACTAATCATTCAAAAGAAAGACCTGATGTGTGGGTTGATAGCCCTGAGAAATCAATTATTCTGTCTATTACCAGTGATATCCGAACTATAGAATCTGAGGTATTTGCTGCACCTTACAGCCTGAGATTTCCTAGGATTGACAGGGTGAGATATGACAAAGCTTGGAACGAATGCCTTGACGTTCAATCTTTTATAGAACTAGTGCATTCTAGCAATGGTACCACACAGAGGGATACAGAATATGGCAGCAAACAGGACAGTAAACCAAAAAGAACGAAATCCTCCACTAGGGGAGAAAAGAGAAACATGTCCATTGTTCCTTCTCATTTAATTCAAACTGATATTTCCAGCGTTAAGGGGGGCTCCTTAATATTTTCAAATATGATGTTCTACTTTGCTAATGTGCCTCCATCGCATTCTCTTGAGTCCTTGCACAAAATAATTGCTGAGAGTGGGGGAACTTTTTCAATGAATTTGAACAACTCAGTCACACATTGTGTTGCCGCAGGCAGCAAGGGCTTTAAATTTGAAGCAGCAAAGCGTCATGGTGATATTATTCATTATTCTTGGGTACTAGACTGTTATGAACAAAAAAAGCTTGTCTGCTTACAGCCTAAGTACTTCCTTTTCCTATCTGAACTGACAAAGAAGAAGTTCCGAGAAGAAATTGATGAGTTCTCAGATTCTTTCTACTTGGACCTAGATCTTGAAGACATCAAGCAGCTCTTGAGCAATATTAGTAAGTCTGAAGATGTCAGCACTGTCGATCATTACAGGAAAAAATACTGCCCAAAGGATAAGTGGTCTTTCTTTTGTGGATGTTCAATTTATTTCCACACTGCAATACCTATGAAAGGAGATTGGCATTATATATTACAAGTTGCTTTGAGGAGATTCAAGCTTGAAGTTCTCATGGGTGGTGGAAAAGTTACCTCTAATCTTACTTGTGCAACCCATTTAGTGGCCTTTCTTGTGCCAGGATGTCGAACTGAATTTGAACAAATACTGAGTAGTTTCACTTCAGTGGAAAGAAAAATTCTCCAAAGCAAGAGGTTGTATATAGTTAATTCCCAGTGGCTGGAAGATTGTTCAGACAGTAATAAAAGATTACCAGAAGACTCTTACAGTTTGAAGCCCTGGGGAATAGAAGAGACAACTGCTGCAGATTGTGAACAGGACTTGGCGTTAGAGGCTCATCTGTGTGGAGATAATACACAAGACCAAAATACATCTTTCTCTGACAAGGGAAATCGTCAAAGAAGTGAAAAAGTTGCATGCGAAGACAGTACGGCCTTCTTATCCCAAGAGAAGGGTATCAAAAGGAAAAGAGGAAGACCTGTTGGCAGTGGTATAAAAAATGTAAAACCAGCTGCCAAACAAACTCGAAGAGCACGACCACAAAATGTGAGAAAGCCTGCTAAAATATGTGAATATGAATCACCGGATGAAAGTGAGTCTCGTGACAAGAGACCATTTGAAAGTCTCGACTTTTATGAGAAACATTCAGAACCCCAGGAGAATGAGGAACAGAAAAATGTCGAAGTTGCTGGGACAGTGGAAAGTTCTGAACAAAATAAAGTTGACAACAAGCTTAAGGACTTGAAGGACAATGATCATGAAATAGAAATGACTGATAGGTACAATGACCACAACAATGAGGTGGTAGAGAAATTAGACTTTTCTGCTGACCCCCTTCAGGCGATGTTATTTGACATGATTCCTAGTCTTGGCACCCAAAAAGTTGAGCAACCTGTGAATCCTAGTGTTAGAGAAGAGAAGGTAGCAGAAACCTCCAATGCAGAAACAGTGCCTACAACTACAAAGAAAAATAAGGTTAGCTTCTTGGATGCTGCCAATGAGCTGCTGAAGGACTGGTAG 3351 0.4235 MATEQTKFSVLCSLFTWTQRSKSAAKKRSKFRKFLDVFCIDRNFFPAIRLILPNLDRERGSYGLKESVLATSLIDALGISRDSPDALRLINWRKGGAATGATAGNFALVAAEVLHSRQGTASGGLTIKELNELLDRLASGENRAEKILVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYAHAMSEIIMQNILVDRYVAFDILYFGDTSVIHQSLKERHEILCKVVRPMKGRLEILVPNAGINSHLTSGEPCWSFIAHNVDEVERFFKETIENRDEGIVLKDRSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGQVAQFLVGLAERPSPNAQPKRFISFCRVGTGLSDEELDVVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWNECLDVQSFIELVHSSNGTTQRDTEYGSKQDSKPKRTKSSTRGEKRNMSIVPSHLIQTDISSVKGGSLIFSNMMFYFANVPPSHSLESLHKIIAESGGTFSMNLNNSVTHCVAAGSKGFKFEAAKRHGDIIHYSWVLDCYEQKKLVCLQPKYFLFLSELTKKKFREEIDEFSDSFYLDLDLEDIKQLLSNISKSEDVSTVDHYRKKYCPKDKWSFFCGCSIYFHTAIPMKGDWHYILQVALRRFKLEVLMGGGKVTSNLTCATHLVAFLVPGCRTEFEQILSSFTSVERKILQSKRLYIVNSQWLEDCSDSNKRLPEDSYSLKPWGIEETTAADCEQDLALEAHLCGDNTQDQNTSFSDKGNRQRSEKVACEDSTAFLSQEKGIKRKRGRPVGSGIKNVKPAAKQTRRARPQNVRKPAKICEYESPDESESRDKRPFESLDFYEKHSEPQENEEQKNVEVAGTVESSEQNKVDNKLKDLKDNDHEIEMTDRYNDHNNEVVEKLDFSADPLQAMLFDMIPSLGTQKVEQPVNPSVREEKVAETSNAETVPTTTKKNKVSFLDAANELLKDW 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00362 1116 ProSitePatterns ATP-dependent DNA ligase signature 2. 377 401 IPR016059 GO:0003909
Viun9g00362 1116 MobiDBLite consensus disorder prediction 961 1001 - -
Viun9g00362 1116 MobiDBLite consensus disorder prediction 1074 1097 - -
Viun9g00362 1116 Pfam BRCT domain, a BRCA1 C-terminus domain 613 696 IPR001357 -
Viun9g00362 1116 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 186 402 - -
Viun9g00362 1116 Pfam DNA ligase N terminus 7 187 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Viun9g00362 1116 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 251 259 IPR016059 GO:0003909
Viun9g00362 1116 Pfam ATP dependent DNA ligase C terminal region 425 544 IPR012309 GO:0003910|GO:0006281|GO:0006310
Viun9g00362 1116 Gene3D - 1 219 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Viun9g00362 1116 MobiDBLite consensus disorder prediction 572 589 - -
Viun9g00362 1116 CDD OBF_DNA_ligase_IV 408 552 - -
Viun9g00362 1116 Pfam ATP dependent DNA ligase domain 298 401 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Viun9g00362 1116 Pfam ATP dependent DNA ligase domain 227 284 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Viun9g00362 1116 SUPERFAMILY Nucleic acid-binding proteins 409 560 IPR012340 -
Viun9g00362 1116 FunFam DNA ligase 2 219 - -
Viun9g00362 1116 SUPERFAMILY BRCT domain 615 700 IPR036420 -
Viun9g00362 1116 Gene3D DNA ligase/mRNA capping enzyme 221 293 - -
Viun9g00362 1116 Gene3D DNA ligase/mRNA capping enzyme 294 403 - -
Viun9g00362 1116 ProSiteProfiles BRCT domain profile. 611 699 IPR001357 -
Viun9g00362 1116 PANTHER DNA LIGASE 4 298 1107 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Viun9g00362 1116 CDD Adenylation_DNA_ligase_IV 215 406 IPR044125 GO:0005524
Viun9g00362 1116 FunFam DNA ligase 404 565 - -
Viun9g00362 1116 Gene3D - 404 565 IPR012340 -
Viun9g00362 1116 Pfam DNA ligase IV 706 739 IPR021536 GO:0003910
Viun9g00362 1116 ProSiteProfiles BRCT domain profile. 798 868 IPR001357 -
Viun9g00362 1116 Gene3D BRCT domain 625 740 IPR036420 -
Viun9g00362 1116 FunFam DNA ligase 626 740 - -
Viun9g00362 1116 ProSiteProfiles ATP-dependent DNA ligase family profile. 298 438 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Viun9g00362 1116 MobiDBLite consensus disorder prediction 565 593 - -
Viun9g00362 1116 Gene3D BRCT domain 757 868 IPR036420 -
Viun9g00362 1116 SUPERFAMILY BRCT domain 751 870 IPR036420 -
Viun9g00362 1116 SMART BRCT_7 772 858 IPR001357 -
Viun9g00362 1116 SMART BRCT_7 613 689 IPR001357 -
Viun9g00362 1116 MobiDBLite consensus disorder prediction 896 1019 - -
Viun9g00362 1116 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 5 210 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00362 Viun-Chr9 2481731 2495989 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00362 215 561 Core DNA Replication Machinery Family AT1G08130 26.065 2.06e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00362 K10777 - gmx:100816002 1910.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00362 9 2481731 2495989 Viun9g00362 9 2481731 2495989 ECH