Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00361 ATGGCGACGGAGCAAACCAAATTCAGCGTGTTGTGCAGCCTCTTCACGTGGACGCAGCGGAGCAAGTCGGCGGCGAAGAAGCGCTCCAAGTTCCGCAAGTTCCTCGACGTCTTCTGCATTGACCGCAACTTCTTCCCTGCCATTCGCCTCATTCTCCCCAACCTCGATCGCGAGCGTGGCTCCTACGGCCTCAAGGAGTCCGTTCTCGCCACCTCTCTCATCGACGCCCTCGGCATCTCCCGTGACTCCCCCGATGCCCTCCGACTCATCAACTGGCGTAAGGGTGGCGCCGCCACCGGCGCTACAGCCGGAAATTTCGCCCTCGTCGCCGCCGAGGTGCTTCACAGCAGGCAAGGGACCGCTTCGGGAGGGTTGACGATAAAGGAGTTGAATGAGTTGCTTGACCGGTTGGCTTCCGGTGAAAACAGGGCTGAGAAAATTTTGGTTCTTTCTACCCTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATCCTGAAAGATCTAAAGCTGGGAATTAGTGAAAAAAGCATTTTTCATGAGTTCCATCCTGATGCAGAAGACTTGTTTAACGTTACCTGTGACTTAAAATTAGTATGTGAAAAGCTAAGGGATCGGAATCAGCGGCATAAGCGGCAGGATATTGAAGTTGGGAAAGCTGTGCGCCCCCAATTAGCTAAGAGAGTTGCTAATGCAACTGAAGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGTTGAATGCAAATTTGATGGCGACCGAATTCAAATTCATAAAAATGGAACTGAGATACATTTTTTCTCAAGGAACTTTATTGATCATTCTGAATATGCACATGCAATGTCAGAAATCATAATGCAAAATATTCTTGTAGATAGGTGTATCCTTGATGGTGAAATGTTGGTGTGGGACACATCCTTAAAACGCTTTGCTGAGTTTGGCTCAAATCAGGAAATAGCCAAGGCAGCAAGAGATGGACTTGATAGTGACAGACAGTTATGCTATGTTGCGTTTGATATCCTTTATTTCGGAGATACTAGTGTGATTCACCAATCTTTGAAGGAAAGACATGAGATATTATGTAAAGTTGTTAGGCCAATGAAGGGACGATTGGAAATTTTGGTACCTAATGCTGGTATCAACAGTCATCTTACTTCAGGTGAACCTTGTTGGTCATTTATTGCTCATAATGTTGATGAAGTTGAGAGGTTTTTCAAGGAAACCATTGAAAATAGAGATGAGGGAATTGTTTTAAAGGACCGCAGCTCTAAATGGGAACCTAGTGATCGTAGTGGGAAGTGGTTAAAATTGAAGCCTGAATACATTCAAGCTGGCTCTGATTTGGATGTACTTATCATAGGTGGCTACTATGGTTCTGGACGACGTGGAGGACAGGTTGCTCAATTCTTGGTTGGCCTTGCAGAACGTCCATCTCCAAATGCACAACCTAAGCGGTTTATATCCTTTTGCAGAGTTGGCACTGGACTCTCTGATGAGGAGCTTGACGTTGTAGTAACCAAACTAAAACCGTACTTCAGAAAGTATGAATATCCAAAGAAGAGGCCACCAAGTTTTTATCAAGTAACTAATCATTCAAAAGAAAGACCTGATGTGTGGGTTGATAGCCCTGAGAAATCAATTATTCTGTCTATTACCAGTGATATCCGAACTATAGAATCTGAGGTATTTGCTGCACCTTACAGCCTGAGATTTCCTAGGATTGACAGGGTGAGATATGACAAAGCTTGGAACGAATGCCTTGACGTTCAATCTTTTATAGAACTAGTGCATTCTAGCAATGGTACCACACAGAGGGATACAGAATATGGCAGCAAACAGGACAGTAAACCAAAAAGAACGAAATCCTCCACTAGGGGAGAAAAGAGAAACATGTCCATTGTTCCTTCTCATTTAATTCAAACTGATATTTCCAGCGTTAAGGGGGGCTCCTTAATATTTTCAAATATGATGTTCTACTTTGCTAATGTGCCTCCATCGCATTCTCTTGAGTCCTTGCACAAAATAATTGCTGAGAGTGGGGGAACTTTTTCAATGAATTTGAACAACTCAGTCACACATTGTGTTGCCGCAGGCAGCAAGGGCTTTAAATTTGAAGCAGCAAAGCGTCATGGTGATATTATTCATTATTCTTGGGTACTAGACTGTTATGAACAAAAAAAGCTTGTCTGCTTACAGCCTAAGTACTTCCTTTTCCTATCTGAACTGACAAAGAAGAAGTTCCGAGAAGAAATTGATGAGTTCTCAGATTCTTTCTACTTGGACCTAGATCTTGAAGACATCAAGCAGCTCTTGAGCAATATTAGTAAGTCTGAAGATGTCAGCACTGTCGATCATTACAGGAAAAAATACTGCCCAAAGGATAAGTGGTCTTTCTTTTGTGGATGTTCAATTTATTTCCACACTGCAATACCTATGAAAGGAGATTGGCATTATATATTACAAGTTGCTTTGAGGAGATTCAAGCTTGAAGTTCTCATGGGTGGTGGAAAAGTTACCTCTAATCTTACTTGTGCAACCCATTTAGTGGCCTTTCTTGTGCCAGGATGTCGAACTGAATTTGAACAAATACTGAGTAGTTTCACTTCAGTGGAAAGAAAAATTCTCCAAAGCAAGAGGTTGTATATAGTTAATTCCCAGTGGCTGGAAGATTGTTCAGACAGTAATAAAAGATTACCAGAAGACTCTTACAGTTTGAAGCCCTGGGGAATAGAAGAGACAACTGCTGCAGATTGTGAACAGGACTTGGCGTTAGAGGCTCATCTGTGTGGAGATAATACACAAGACCAAAATACATCTTTCTCTGACAAGGGAAATCGTCAAAGAAGTGAAAAAGTTGCATGCGAAGACAGTACGGCCTTCTTATCCCAAGAGAAGGGTATCAAAAGGAAAAGAGGAAGACCTGTTGGCAGTGGTATAAAAAATGTAAAACCAGCTGCCAAACAAACTCGAAGAGCACGACCACAAAATGTGAGAAAGCCTGCTAAAATATGTGAATATGAATCACCGGATGAAAGTGAGTCTCGTGACAAGAGACCATTTGAAAGTCTCGACTTTTATGAGAAACATTCAGAACCCCAGGAGAATGAGGAACAGAAAAATGTCGAAGTTGCTGGGACAGTGGAAAGTTCTGAACAAAATAAAGTTGACAACAAGCTTAAGGACTTGAAGGACAATGATCATGAAATAGAAATGACTGATAGGTACAATGACCACAACAATGAGGTGGTAGAGAAATTAGACTTTTCTGCTGACCCCCTTCAGGCGATGTTATTTGACATGATTCCTAGTCTTGGCACCCAAAAAGTTGAGCAACCTGTGAATCCTAGTGTTAGAGAAGAGAAGGTAGCAGAAACCTCCAATGCAGAAACAGTGCCTACAACTACAAAGAAAAATAAGGTTAGCTTCTTGGATGCTGCCAATGAGCTGCTGAAGGACTGGTAG 3474 0.424 MATEQTKFSVLCSLFTWTQRSKSAAKKRSKFRKFLDVFCIDRNFFPAIRLILPNLDRERGSYGLKESVLATSLIDALGISRDSPDALRLINWRKGGAATGATAGNFALVAAEVLHSRQGTASGGLTIKELNELLDRLASGENRAEKILVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYAHAMSEIIMQNILVDRCILDGEMLVWDTSLKRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSVIHQSLKERHEILCKVVRPMKGRLEILVPNAGINSHLTSGEPCWSFIAHNVDEVERFFKETIENRDEGIVLKDRSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGQVAQFLVGLAERPSPNAQPKRFISFCRVGTGLSDEELDVVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWNECLDVQSFIELVHSSNGTTQRDTEYGSKQDSKPKRTKSSTRGEKRNMSIVPSHLIQTDISSVKGGSLIFSNMMFYFANVPPSHSLESLHKIIAESGGTFSMNLNNSVTHCVAAGSKGFKFEAAKRHGDIIHYSWVLDCYEQKKLVCLQPKYFLFLSELTKKKFREEIDEFSDSFYLDLDLEDIKQLLSNISKSEDVSTVDHYRKKYCPKDKWSFFCGCSIYFHTAIPMKGDWHYILQVALRRFKLEVLMGGGKVTSNLTCATHLVAFLVPGCRTEFEQILSSFTSVERKILQSKRLYIVNSQWLEDCSDSNKRLPEDSYSLKPWGIEETTAADCEQDLALEAHLCGDNTQDQNTSFSDKGNRQRSEKVACEDSTAFLSQEKGIKRKRGRPVGSGIKNVKPAAKQTRRARPQNVRKPAKICEYESPDESESRDKRPFESLDFYEKHSEPQENEEQKNVEVAGTVESSEQNKVDNKLKDLKDNDHEIEMTDRYNDHNNEVVEKLDFSADPLQAMLFDMIPSLGTQKVEQPVNPSVREEKVAETSNAETVPTTTKKNKVSFLDAANELLKDW 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00361 1157 Pfam DNA ligase IV 747 780 IPR021536 GO:0003910
Viun9g00361 1157 ProSiteProfiles BRCT domain profile. 839 909 IPR001357 -
Viun9g00361 1157 MobiDBLite consensus disorder prediction 1113 1138 - -
Viun9g00361 1157 SMART BRCT_7 654 730 IPR001357 -
Viun9g00361 1157 SMART BRCT_7 813 899 IPR001357 -
Viun9g00361 1157 ProSitePatterns ATP-dependent DNA ligase signature 2. 418 442 IPR016059 GO:0003909
Viun9g00361 1157 Pfam BRCT domain, a BRCA1 C-terminus domain 654 737 IPR001357 -
Viun9g00361 1157 FunFam DNA ligase 667 781 - -
Viun9g00361 1157 FunFam DNA ligase 2 219 - -
Viun9g00361 1157 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 251 259 IPR016059 GO:0003909
Viun9g00361 1157 Gene3D BRCT domain 798 909 IPR036420 -
Viun9g00361 1157 ProSiteProfiles BRCT domain profile. 652 740 IPR001357 -
Viun9g00361 1157 MobiDBLite consensus disorder prediction 606 634 - -
Viun9g00361 1157 Gene3D - 445 606 IPR012340 -
Viun9g00361 1157 SUPERFAMILY Nucleic acid-binding proteins 450 601 IPR012340 -
Viun9g00361 1157 MobiDBLite consensus disorder prediction 937 1060 - -
Viun9g00361 1157 FunFam DNA ligase 445 606 - -
Viun9g00361 1157 SUPERFAMILY BRCT domain 656 741 IPR036420 -
Viun9g00361 1157 NCBIfam ATP-dependent DNA ligase 62 600 IPR000977 GO:0003910|GO:0005524|GO:0071897
Viun9g00361 1157 Pfam ATP dependent DNA ligase domain 227 442 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Viun9g00361 1157 Pfam DNA ligase N terminus 7 187 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Viun9g00361 1157 Pfam ATP dependent DNA ligase C terminal region 466 585 IPR012309 GO:0003910|GO:0006281|GO:0006310
Viun9g00361 1157 Gene3D - 1 219 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Viun9g00361 1157 MobiDBLite consensus disorder prediction 613 630 - -
Viun9g00361 1157 Gene3D DNA ligase/mRNA capping enzyme 221 444 - -
Viun9g00361 1157 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 5 210 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Viun9g00361 1157 Gene3D BRCT domain 666 781 IPR036420 -
Viun9g00361 1157 FunFam DNA ligase 221 444 - -
Viun9g00361 1157 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 186 443 - -
Viun9g00361 1157 CDD Adenylation_DNA_ligase_IV 215 447 IPR044125 GO:0005524
Viun9g00361 1157 ProSiteProfiles ATP-dependent DNA ligase family profile. 330 479 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Viun9g00361 1157 SUPERFAMILY BRCT domain 792 911 IPR036420 -
Viun9g00361 1157 MobiDBLite consensus disorder prediction 1002 1042 - -
Viun9g00361 1157 CDD OBF_DNA_ligase_IV 449 593 - -
Viun9g00361 1157 PANTHER DNA LIGASE 4 4 1148 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00361 Viun-Chr9 2481731 2495989 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00361 215 602 Core DNA Replication Machinery Family AT1G08130 27.970 3.00e-31 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00361 K10777 - gmx:100816002 2013.42