Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00352 ATGCGGGATGCGGAGAATTTAAATAAGAAAGGATCTGGAAAATCCAGTTACTCAAAGGAACAGATTAAGTCCAAGCTATTTTCATCAAAATTAAAAGCAAGTAGCACAAAACACCGAAGGAAGGAACACAAAGAGAAGTCAAGATCTCATAAACTCAGAGTTGGTACAAACACATCAAAGAAAAGAGTTGCTGATTCTTCTATCAAGGCACCACTTGAGGACTCTTCAAATAAAAAAGTGATTATTAGAAAAACTCTTCATAAAACTGATGGGAACTCTTCACGGATGGTGTCTTCAACAAAGCTACAAGGAAGAAAAAATCCTCATAGTTCTAGAAAAGAGGGGAATGGTGTTGATGAAGAGGCAAAAAATAAAAAACGTAAGAGGAACAAAAAGAAGAGCAGACAAAGGGACAGCATGGATCATGATGATGCTTCACGCCTTCGAAGGAGAACGAGATACCTCTTAATAAAAATGAAGCTGGAGCAAAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAAAGTCGGGAGAAGATTAGGCCAGAAAAGGAGCTACTAAGAGCGAAAAAGCAGATTTTAAAATGTAAACTTAGTATTCGTGATGTTATACGCCAGCTGGATTCTCTTAGTTCTGTGGGTAGCATTGAAGATTCTGTCATTGCTCCAGATGGATCTGTATATCATGAACATATATTTTGTGCCAATTGCAAACTACATGAAGCTTTCCCAGATAATGATATTATACTATGTGATGGCACATGCAATCGTGCTTTTCACCAAAGATGTCTGAATCCACCTTTGGATACTGAAAATATTCCTCCTGGAGACCAAGGCTGGTTTTGCCAGTTTTGTGAATGTAAGATAGAAATTATAGAGTCAACAAATGCCCATCTTGGGACTCAATTTTCCTTGGAGAGTAGTTGGCAGGATGTATTCAAGGAAGAGGCTGATATGCCTGATGGTCATATGGCACTTCTAAATCCAGAAGAAGAATGGCCATCAGATGATCCTGAAGATGATGATTACAATCCAGAGAGGAAAGAAGACAGCCACAGCATAAATACAGAAGGTGCTGATGAAAATGCATCCAATGATTCAACCAGTTCTTCGAGTTTGTGGTCTTTGAATGAAGAATGTCCTCCAGCAGATGACGACCTTAGTCGTCAATATTATTCTGTCAATAGCTTCATTGATTCTGATGAATCCGGTGAAATAGCATGCGGCCGTAGGCAGCGTAAAGCTGTTGACTACAAGAAACTGTATGATGAAATGTTTGGGAAGGATGCTCCACCTTGTGAACAAGTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGATGCTGTTAATACTCTAATGACCCTGCATGAAAGTGAAAATAAACATCCCAATAATGAGAGCAATGATAGAATAAGAAAGGGCTCTTCAGGCATACAAATGAGAAGATCTTGTTTCAGAATTCCACTTGATGCAGTTGAGAAACTTCGGCAAGTTTTTGCAGAGAATGAGCTTCCTCCAAGATCCGTGAAGGAGGGTCTTTCAAAAGAATTGGGACTAGATCCTGAAAAGGTTAGCAAATGGTTCAAAAACGCCCGTTACTCGGCACTTAAAACCAGAAGGTATCAATCAGAAGGAGAACAGCTTCAGAGTTTCACATCTCAGATATCAAAGCATTCTACATCTCCAAACATGGAGAAAGATGAGTTTCTGAGATCAGAAGTCCCCAAAATTACTCTGATTCATTCCCAGAAGGATGATCAAAGCATCACAGGACAAGAGAAAAATAAATTATGCAACAGTCTTTTGAAGAGAAGGAAGAAAAAACCATCTCCACCTCTGTCAAGAGAAAACAGCAACAAGGAATCCATGGAGATGAGTGATGATGTTAATTTGAAGAAACTTTTGAAAGAAAAGAAAAAAAGGGTAAATTTTGTATATGAAGGAGACTCTGAGATAGCAGAGTTGGAGTTTGAAAGACTGAGCAAAGTGAAGAGTAAAGTAGATAGCATGAAGCAAAAACTAAATGAAGTTCAAAATTGCAGAGCAAAGGGATCAACAAATGAACCCTCTATTATATATGTTCCCACAGCCCAATTAAGGGAAAAGGTTGAGTAA 2145 0.3893 MRDAENLNKKGSGKSSYSKEQIKSKLFSSKLKASSTKHRRKEHKEKSRSHKLRVGTNTSKKRVADSSIKAPLEDSSNKKVIIRKTLHKTDGNSSRMVSSTKLQGRKNPHSSRKEGNGVDEEAKNKKRKRNKKKSRQRDSMDHDDASRLRRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELLRAKKQILKCKLSIRDVIRQLDSLSSVGSIEDSVIAPDGSVYHEHIFCANCKLHEAFPDNDIILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCQFCECKIEIIESTNAHLGTQFSLESSWQDVFKEEADMPDGHMALLNPEEEWPSDDPEDDDYNPERKEDSHSINTEGADENASNDSTSSSSLWSLNEECPPADDDLSRQYYSVNSFIDSDESGEIACGRRQRKAVDYKKLYDEMFGKDAPPCEQVSEDEDWGPGKRKRREKESDAVNTLMTLHESENKHPNNESNDRIRKGSSGIQMRRSCFRIPLDAVEKLRQVFAENELPPRSVKEGLSKELGLDPEKVSKWFKNARYSALKTRRYQSEGEQLQSFTSQISKHSTSPNMEKDEFLRSEVPKITLIHSQKDDQSITGQEKNKLCNSLLKRRKKKPSPPLSRENSNKESMEMSDDVNLKKLLKEKKKRVNFVYEGDSEIAELEFERLSKVKSKVDSMKQKLNEVQNCRAKGSTNEPSIIYVPTAQLREKVE 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00352 714 SMART HOX_1 490 552 IPR001356 GO:0003677
Viun9g00352 714 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 14 712 - -
Viun9g00352 714 FunFam pathogenesis-related homeodomain protein-like 227 287 - -
Viun9g00352 714 MobiDBLite consensus disorder prediction 549 578 - -
Viun9g00352 714 ProSiteProfiles 'Homeobox' domain profile. 488 548 IPR001356 GO:0003677
Viun9g00352 714 MobiDBLite consensus disorder prediction 10 31 - -
Viun9g00352 714 MobiDBLite consensus disorder prediction 327 382 - -
Viun9g00352 714 MobiDBLite consensus disorder prediction 32 57 - -
Viun9g00352 714 ProSitePatterns Zinc finger PHD-type signature. 236 287 IPR019786 -
Viun9g00352 714 MobiDBLite consensus disorder prediction 429 460 - -
Viun9g00352 714 Coils Coil 670 690 - -
Viun9g00352 714 SUPERFAMILY FYVE/PHD zinc finger 227 292 IPR011011 -
Viun9g00352 714 Gene3D - 490 557 - -
Viun9g00352 714 MobiDBLite consensus disorder prediction 609 637 - -
Viun9g00352 714 MobiDBLite consensus disorder prediction 91 105 - -
Viun9g00352 714 MobiDBLite consensus disorder prediction 1 146 - -
Viun9g00352 714 MobiDBLite consensus disorder prediction 107 125 - -
Viun9g00352 714 MobiDBLite consensus disorder prediction 549 570 - -
Viun9g00352 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 284 IPR013083 -
Viun9g00352 714 Pfam Homeodomain 501 543 IPR001356 GO:0003677
Viun9g00352 714 SMART PHD_3 235 288 IPR001965 -
Viun9g00352 714 SUPERFAMILY Homeodomain-like 491 555 IPR009057 -
Viun9g00352 714 MobiDBLite consensus disorder prediction 429 485 - -
Viun9g00352 714 Pfam PHD-finger 235 290 IPR019787 -
Viun9g00352 714 MobiDBLite consensus disorder prediction 359 379 - -
Viun9g00352 714 CDD homeodomain 496 549 IPR001356 GO:0003677
Viun9g00352 714 ProSiteProfiles Zinc finger PHD-type profile. 233 290 IPR019787 -
Viun9g00352 714 FunFam pathogenesis-related homeodomain protein 490 554 - -
Viun9g00352 714 CDD PHD_PRHA_like 235 287 IPR045876 -
Viun9g00352 714 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00352 Viun-Chr9 2411524 2417721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00352 135 553 Homeobox Transcription Factor Family AT4G29940 56.381 1.26e-153 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Viun9g00352 PHD 1e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00352 - - gmx:100816912 1117.45