Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00332 ATGTCAGACAGCAATGTTCCTGAAATAAAGTACGATGTTTTTGTTAGCTTTAGAGGCAAGGAAATCCGTGACGGTTTTCTTAGTCATCTGACTGAGGCATTTGACATGAAGAAAATAAATGGTTTTGTAGATGATAAACTTGAGAGGGGAGAAGAAATATGGCCATCACTTGTTACAGCTATTGAAAGATCAGCGATTTCGTTGATCATCTTCTCACCAGATTATGCTTCTTCTCGTTGGTGTTTAGAAGAAGTGCTCAAAATAGTTGAATGTAAAGAGAAATATGAACGGATTGTAATTCCTGTTTTCTACAAAGTGGCACCCACAGATGTAAGACATCAATCTGGAAGTTACGAAAATGCCTTTGCTAACCATCGACTGAACTATACGAGACAGGTGCAAATGTGGAAAGATGCTCTGAAAAAATCTGCTGATTTATCTGGAATTGAATCGTCCAAATTTAGAAATGATGCTGAGGTTGTTAAAGAAATTGTGGATCTTGTGCTGAAGAGGTTGGATAAACACCAAGTTATCCCAAAAGGACTTGTTGGAATCGATGAAAAAATTGCAACTTTGGAATCATGGATATGTAATGAACCAAAAGCCACTCACCTCATTGGAATTTGGGGTATGGGGGGTATCGGTAAGACAACCCTTGCAGAAGTAGTATTTCATAGACTACGATCTCAATATCAAGGATCTTACTTCTTAGCCAATGAACGAGATCAATCAACCAAACATGGAATAATTCATTTGAAGAAAATAATATTTTCTAAACTTTTAGGACATGAAGTAGATATTGACACTCCAAATTCCTTGCCTGAAAATATTGTTAGGAGAATTGGTTATATGAAGGTTCTTGTTGTTTTTGACGATGTGAATGATTCAGATCACATAGGAAAACTGTTGGGAAGTCTTGATAATTTTGGTATGGGTAGTACAGTGATTGTGACAACTCGAGATGAGCAAGTGCTTAGGATTAACAGAGTCAGTAAGACGTACAAAGTGAAAGAGTTTAGTTCTGACGAAGCACTTGAACTTTTCAACTTGAATGCCTTTAGTGAAAGTAATGAGGCAAAGGAATACGATGAGATATCAAAATTGGTAGTACATTATGCTAAAGGCAATCCATTAGTTGTTAAAGTTTTGGCTCATCTTCTTCATGGAAGAAATAAGGAAGAATGGGAAGGTTTGTTGGGCAAGCTAAAAACAATGCCTCCAAGAGAAGTTTATGATGTAATGAAACTGAGTTATGATAGTCTAGATCGCAAAGAGCAACAAATTTTTCTAGATTTGGCATGTTTCTTTCTTAGATTGCTTGTACCAGTGGAGGTGGGTGATCTGAAATGTTTATTGAAAGACAATGAAAGTGATAATTCAGTGGCTTTTGAGTTAAGAAGACTGGAAGACAAAGCTCTCATAACAATCTCAGAGGACAATACTGTATCAATGCATGATAGTTTACAAGAAATGGCTTGGGAGATTGTTCGTCAAGAGTGTGTTGAAGATCCTGGAAGCCGCAGTCGGTTGTGGGATCCCAATGATATCAATGAAGCTTTGAAAAATGAAAAGGTTAGTGAGGACATTAAAAGCATACAAGTACAATTGACTTCAAATAAGAAGCAAATGTTAAGTCCTCAAATTTTTTCTCTGAGAAAATTAAAATTTCTGGAAATTTCTGGGGTAGATGGAAATACTTACCACCAAGTTATTCTTGTTGAAGGAGCACCCTTTTTGGCCACTGAACTAAGATTTGTGTGCTGGGAGGATTTCCCTATGAAGTGCTTGCCAGAGAGTTTTAATGCTGAAAAACTTGTTATATTGGAATTGAGAATGAGCAGAATGAGAAAGTTGTGGGATGGAGTGAAGAATCTAGCGAATTTAAAAAGACTAAATCTCCATTGGGCCATGAAGTTAAAGGAGCTTCCAGATTTATCAGGAGCCATAAGACTTGAAGAACTGTACCTCTGTGGTTGTTATAGGTTGAGAAGCCTGCATTCATCTATTTTCTCTCTGCCAAAACTTAAGACATTGGAACTGTCTCGCTGCATGTCGTTTACCATACTTCCAAGTTCACCTTGGAGAAACAGTGAATTGAAGTGTCTATTGATGCGTGCTTGCGACAATCTTCAAACAATATCAGAGCTTCCTCCTTTCCTTACAACTTTAGATGTCTCCTTCTCAGCATCACTGAAAACTCTACCCAACCTTCCTCTTTCCCTTCAAGCCCTAAATGCTGCTTTTTGCGAGTCACTTGAGAATCTACCAGAGCTTCCACCGTTACTTTCAACTTTAAATGTCTCTGCATGCTATTCACTTCAAATTCCACCCAACCTTCCCTTTTCTCTTCAAATTGTAAACCTCTGTGAAAGCTGCTCACTTCGGAGTATACTTGAGCATATTCGATCCATTAAAACTACAGATACCAAATATTTTGAAAGTCAACAAACTCTATTAAATTTTCCCACAGACCTTCAAATGCCGTGTACCTGCAATTCAATCGAGACTCCACAAGAGCTTTCCCCGTCTCTCAGCTCTCAATTTGATGATTTTTCTGCTTACTTGGATACCTGTATAAGAAACTTCCTGAAGGCATAA 2598 0.3772 MSDSNVPEIKYDVFVSFRGKEIRDGFLSHLTEAFDMKKINGFVDDKLERGEEIWPSLVTAIERSAISLIIFSPDYASSRWCLEEVLKIVECKEKYERIVIPVFYKVAPTDVRHQSGSYENAFANHRLNYTRQVQMWKDALKKSADLSGIESSKFRNDAEVVKEIVDLVLKRLDKHQVIPKGLVGIDEKIATLESWICNEPKATHLIGIWGMGGIGKTTLAEVVFHRLRSQYQGSYFLANERDQSTKHGIIHLKKIIFSKLLGHEVDIDTPNSLPENIVRRIGYMKVLVVFDDVNDSDHIGKLLGSLDNFGMGSTVIVTTRDEQVLRINRVSKTYKVKEFSSDEALELFNLNAFSESNEAKEYDEISKLVVHYAKGNPLVVKVLAHLLHGRNKEEWEGLLGKLKTMPPREVYDVMKLSYDSLDRKEQQIFLDLACFFLRLLVPVEVGDLKCLLKDNESDNSVAFELRRLEDKALITISEDNTVSMHDSLQEMAWEIVRQECVEDPGSRSRLWDPNDINEALKNEKVSEDIKSIQVQLTSNKKQMLSPQIFSLRKLKFLEISGVDGNTYHQVILVEGAPFLATELRFVCWEDFPMKCLPESFNAEKLVILELRMSRMRKLWDGVKNLANLKRLNLHWAMKLKELPDLSGAIRLEELYLCGCYRLRSLHSSIFSLPKLKTLELSRCMSFTILPSSPWRNSELKCLLMRACDNLQTISELPPFLTTLDVSFSASLKTLPNLPLSLQALNAAFCESLENLPELPPLLSTLNVSACYSLQIPPNLPFSLQIVNLCESCSLRSILEHIRSIKTTDTKYFESQQTLLNFPTDLQMPCTCNSIETPQELSPSLSSQFDDFSAYLDTCIRNFLKA 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00332 865 Gene3D - 339 422 IPR042197 -
Viun9g00332 865 Pfam TIR domain 10 173 IPR000157 GO:0007165
Viun9g00332 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 432 IPR027417 -
Viun9g00332 865 SUPERFAMILY L domain-like 544 808 - -
Viun9g00332 865 Pfam NB-ARC domain 201 408 IPR002182 GO:0043531
Viun9g00332 865 SMART till_3 10 146 IPR000157 GO:0007165
Viun9g00332 865 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 174 - -
Viun9g00332 865 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 772 IPR044974 GO:0006952
Viun9g00332 865 Gene3D - 5 173 IPR035897 -
Viun9g00332 865 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 148 IPR035897 -
Viun9g00332 865 SUPERFAMILY "Winged helix" DNA-binding domain 409 521 IPR036390 -
Viun9g00332 865 Gene3D Ribonuclease Inhibitor 518 723 IPR032675 -
Viun9g00332 865 ProSiteProfiles TIR domain profile. 9 172 IPR000157 GO:0007165
Viun9g00332 865 PRINTS Disease resistance protein signature 205 220 - -
Viun9g00332 865 PRINTS Disease resistance protein signature 373 387 - -
Viun9g00332 865 PRINTS Disease resistance protein signature 280 294 - -
Viun9g00332 865 PRINTS Disease resistance protein signature 670 686 - -
Viun9g00332 865 Gene3D - 174 334 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00332 Viun-Chr9 2235650 2239038 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00332 11 849 WRKY Transcription Factor Family AT4G12020 29.322 1.08e-81 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00332 - - var:108330977 1357.43