LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun9g00311	ATGTCAAATAAAAGCTCAACTCAAATAAAGTACGATGTTTTTGTTAGCTTCAGGGGTGAAGATATCCGTGATGGGTTCCTTAGCCATTTGACAGAGGCTTTTGATGTGAAGAAAATAAATGCCTTTGTAGATGATAAGCTTGAGAAGGGGGAAGAGCTATGGACATCACTCGTTGCTGCAATTGAAGGATCATCCATTTCTTTGATCATATTCTCCCCAGACTATGCTTCTTCTCGTTGGTGTTTGAAAGAACTTGTGACCATATTTGAATGCAAAGAGAAATATGGACATACTGTCATCCCTGTTTTCTACCATGTAACACCTACAGACGTACGGCATCAATCATCTGATAGTTACAGAAAAGCATTCGCTGAGCATGCAAGAAAACATAAGAATGAGGTTCAACTCTGGAGACGTGTCTTCAAAAAGTCTGCTGATTTATCTGGCATTGAGTCATCAAAATTTCGAAATGATGCGGACCTGCTAAAAGCAATAGTGGATCTAGTGATCACGAAGTTGAGGAAATCCCTGGTTAACTCAAAAGTGCTTGTTGGAATCGATAAAAGAATTGCAGATGTAGAATCATTGATACATAGAGAGTCAGAAAAAGCCCGTCTAATTGGACTTTGGGGTATGGGTGGTATTGGCAAGACAACCCTTGCAGAAGAAGTATTTAACAAACTAACGTCCAAATATGAAGGTTGCTATTTTTTGGCCAATGAAAGAGAACAGTTAAGTAGACATGGAAAAGTTTCTTTGAAGAAAGAAATTTTTTCTGCACTGTTAGGAGGTGTAAAAATCGACACACCAAATTCATTGCCAGAAGATATTGTTAGGCGAATTCGTCAAATGAAGGTTCTCATTGTTCTTGATGATGTATATGATTCAGATCACATAACAGATCTTTTAGGAGCTGTTGACAATTTTGGATCAGGCAGTAGCATAATTGTAACAACCAGAGATGAGCAAGTGCTTAAAGCTAACAAAGCTGATGAGATATACCATGTTAGAGAATTGACTTCAGATGAAGCTCTTGAACTTTTCAATTTGAATGCCTTTAACCAAAGTGTTCATCAAAGGGAGTACAATGAACTCTCAAAAAGGATTGTACATTATGCCAAAGGGCTTCCACTAATTCTGAAATTTTTGGCTCATCGACTACATGGAAAGAATGTGGAAGTATGGGAAAGTGAGCTAGACAAGCTTAAAAAAGTGCCTCCTGCAAAAGTTTATGATGTCATAAAGCTGAGTTACGACAATTTAGATCGAAAAGAAAAAGAAGTTTTTCTTGATCTTGCATGTTTTCTTTGCAGATCACGTGAGAAGATAACCATTGGCTACCTAAAATATTTACTGAAAGATGGTGAAAGAGATAATTCAGTGGTTGTGGCACTAGAAAGACTTAAAGATAAAGCTCTTGTAACTTTTTCCAAAGATAATGTTGTATGTATGCATGATAGTATACAAGAAATGGCTTGGGAGATTGTTCGTCAAGAGTCTACTGAAGACCCTGGAAAACGCAGCCGGTTGTTGGATCCTGATGACATCTATGAAGCTTTGGAAAATGATAAGGTTAGTGAGGCCATTAGAAGCATACAAATTGACTTGAAAGAACTTAAGGAACAAAAATTAATGCCTCACATATTTGCTAAGATGAGCAGACTAAGATTCATGGAAATATATGGGGAATGTAACTATAATTGCTACAGTCAACTAGTTGCTGAAGGGCTTCAACTTTTGGGAACTGAACTAAGATTTCTTTGTTGGGATTTTTACCCTCTAAAATCCTTGCCAGACAAATTTTCAGGTGAAAAGCTTGTGATATTGAAATTGGAATCGGGTGGAATGGAAAAACTTTGGGATGGAGTGAAGAATCTGGCGAATTTAAAAGAACTTGACCTCAGAAACTCACAAAACTTGAAGGAGCTGCCAGATTTATCAAAAGCCACAAATATTGAAGTATTGTGCCTCATGCGTTGTTTGAGTTTAAACAGTGTGCACCCATCTGTTTTCTCTTTGCCTAAACTTGAGATTTTGAACCTTTGTGGGTGCGAGTCCCTTACTATACTCGCAACCGATCTCCATTTATGCAGGCTCAGTTATCTCAACCTTAGTAGGTGTTATAATCTTAAGGAGTTCACACTGAAATCAGATAATTTGAAAGAACTGAGATTAGAACTCACGAGGATGAAAGCACTTCCTTCATCATTAGGGCATCAACGCAGGCTTGAATTGCTAAGTCTTGGTAGAAGTCTTATTGAGAGGTTACCTGCATTCTTCTCCAATACACAACTGTTACATCTAGACATATCCTTTTGCTGGAACCTTGTAACCATACCAGAGCTTCCTCTTTCCCTGCAAACTCTATATGCTGCCGGCTGCGAATCATTGAAGACTGTATTCTTCCATTCAACGGCAGTTGAACAATTAAAGGAAAACAGAAAACAGGTTTTGTTCTTCAAATGCAGGAACTTGGATGAACATTCTCTAGAGGCTATTGGGTTGAATGCACGAATAAACGTGATGAAATTTGCTAACCAACACCTATCTGCACCAAAGCAAGATGATTTTGAAAATTACAACGATTATGACAAGAAGTATGAATCTTATCAAGCCTTTTATGGGTATCCAGGAAGCAGTGTTCCAGAATGGTTGGAGTTTAAGTCGAAAAAAGATTATGTAATTATAGATCTCTCTTCTGCTCCACCTTCCCCTGTATATGGCTTCATTTTGGGCTTCGTACTCTTCGAAGAACTTGATAAGCTTGAATTTAGCATCGCTATAACTGATTGTGAGGGTAAAGGTATATTCGACGAAGTTAGACTGAAACTAAGTTATATGTTTTGGTCTGTCAAATCATGTGAAGTGGTTGTGATGTATGACCAAAGATGTTCCAACTTCCTAAATAGCATAGCCAAAAATCTCACAAGGTTTAAAATCAACGTTAGAAGCAATGGCAAATATTATCGGGCGTTTCCATCACGTGGATTCGGGGTGAGCATAGTAAGAACATCGTCATATAGCAGTTTCATGCAGCAAATGGAATTGGGTGACTCTATGTACCAATTTCATTGA	3075	0.3795	MSNKSSTQIKYDVFVSFRGEDIRDGFLSHLTEAFDVKKINAFVDDKLEKGEELWTSLVAAIEGSSISLIIFSPDYASSRWCLKELVTIFECKEKYGHTVIPVFYHVTPTDVRHQSSDSYRKAFAEHARKHKNEVQLWRRVFKKSADLSGIESSKFRNDADLLKAIVDLVITKLRKSLVNSKVLVGIDKRIADVESLIHRESEKARLIGLWGMGGIGKTTLAEEVFNKLTSKYEGCYFLANEREQLSRHGKVSLKKEIFSALLGGVKIDTPNSLPEDIVRRIRQMKVLIVLDDVYDSDHITDLLGAVDNFGSGSSIIVTTRDEQVLKANKADEIYHVRELTSDEALELFNLNAFNQSVHQREYNELSKRIVHYAKGLPLILKFLAHRLHGKNVEVWESELDKLKKVPPAKVYDVIKLSYDNLDRKEKEVFLDLACFLCRSREKITIGYLKYLLKDGERDNSVVVALERLKDKALVTFSKDNVVCMHDSIQEMAWEIVRQESTEDPGKRSRLLDPDDIYEALENDKVSEAIRSIQIDLKELKEQKLMPHIFAKMSRLRFMEIYGECNYNCYSQLVAEGLQLLGTELRFLCWDFYPLKSLPDKFSGEKLVILKLESGGMEKLWDGVKNLANLKELDLRNSQNLKELPDLSKATNIEVLCLMRCLSLNSVHPSVFSLPKLEILNLCGCESLTILATDLHLCRLSYLNLSRCYNLKEFTLKSDNLKELRLELTRMKALPSSLGHQRRLELLSLGRSLIERLPAFFSNTQLLHLDISFCWNLVTIPELPLSLQTLYAAGCESLKTVFFHSTAVEQLKENRKQVLFFKCRNLDEHSLEAIGLNARINVMKFANQHLSAPKQDDFENYNDYDKKYESYQAFYGYPGSSVPEWLEFKSKKDYVIIDLSSAPPSPVYGFILGFVLFEELDKLEFSIAITDCEGKGIFDEVRLKLSYMFWSVKSCEVVVMYDQRCSNFLNSIAKNLTRFKINVRSNGKYYRAFPSRGFGVSIVRTSSYSSFMQQMELGDSMYQFH	1024

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun9g00311	1024	FunFam	Disease resistance protein (TIR-NBS-LRR class)	7	175	-	-
	Viun9g00311	1024	Pfam	NB-ARC domain	195	405	IPR002182	GO:0043531
	Viun9g00311	1024	Coils	Coil	522	542	-	-
	Viun9g00311	1024	Gene3D	-	338	422	IPR042197	-
	Viun9g00311	1024	SUPERFAMILY	L domain-like	535	811	-	-
	Viun9g00311	1024	SUPERFAMILY	Toll/Interleukin receptor TIR domain	2	149	IPR035897	-
	Viun9g00311	1024	Gene3D	-	4	176	IPR035897	-
	Viun9g00311	1024	ProSiteProfiles	TIR domain profile.	9	173	IPR000157	GO:0007165
	Viun9g00311	1024	SMART	till_3	10	147	IPR000157	GO:0007165
	Viun9g00311	1024	PRINTS	Disease resistance protein signature	624	640	-	-
	Viun9g00311	1024	PRINTS	Disease resistance protein signature	206	221	-	-
	Viun9g00311	1024	PRINTS	Disease resistance protein signature	280	294	-	-
	Viun9g00311	1024	PRINTS	Disease resistance protein signature	373	387	-	-
	Viun9g00311	1024	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	177	432	IPR027417	-
	Viun9g00311	1024	Gene3D	-	177	335	IPR027417	-
	Viun9g00311	1024	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	11	714	IPR044974	GO:0006952
	Viun9g00311	1024	Pfam	TIR domain	10	177	IPR000157	GO:0007165
	Viun9g00311	1024	SUPERFAMILY	"Winged helix" DNA-binding domain	409	520	IPR036390	-
	Viun9g00311	1024	Gene3D	Ribonuclease Inhibitor	461	857	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun9g00311	Viun-Chr9	2070607	2075351	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun9g00311	6	781	WRKY Transcription Factor Family	AT4G12020	31.486	1.83e-86	304

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun9g00311	-		-	vun:114163400	2024.59