Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00310 ATGTTGTATTTCTTTGTCTCTTGTTCATTTCTCTGTGTGTTCCTTTTCATTTTCTCTAGGTTATTTCCAAAACTGAATGGTGTAGAGAAAAAACCCATCTCAAACAACAACTCACCTAAAATAAAGTATGATGTTTTTGTTAGCTTCAGGGGTGAAGATATCCGCGATGGGTTCCTTAGCCATCTGACTGAGGCTTTTGACGTGAAGAAAATAAATGCCTTTGTAGATGATAAGCTTGAAAAGGGGGAAGAACTATGGCCGTCACTTGTTGCTGCAATTGGAGGATCATCCATTTCTTTGATCATATTCTCACCAGAATATGCTTCTTCTCGTTGGTGTTTGAAAGAACTTGTGACCATACTTGAATGCAAAGAGAAATATGGACATACCGTCATCCCTGTTTTCTACCATGTAACACCTACAGATGTACGGCATCAATCATCTCAAGGTTACAAAGAAGCATTCTCCGAGCATGCAAGAAAACGTAAGAGTGAGGTTCAACTCTGGAGACGTGTCTTCGAAAAGTCTGCTGATTTATCTGGAATTGAGTCATCAAAATTTCGAAATGATGCTGACATGCTAAAAGCAATAATAGATCTTGTGCTGATGAGGTTGAGGAAATCCGTGGTTATCTCAAAAGGGCTCGTTGGAATCGATAAAAGAATTGCAGATGTAGAATCATTGATACACAGAGATGTAGAGTCTGAAAAAGCCCGTCTTATTGGACTTTGGGGTATGGGTGGTATAGGCAAGACAACCCTTGCAGAAGAAGTATTCAACAAACTACGGTCTAAATATGAAGGTTGTTATTTTTTGGCCAATGAAAGAGAACAGTCAAGTAGAAAAGGAAAAGTTTCTTTGAAGGAAGAAATTTTTTCTGCTCTGTTAGGAGATGTGAAAATTGACACACCCAATTCACTGCCAGAAGATATTGTTAGGAGAATTCGTCAAATGAAGGTTCTCATTATTCTTGATGATGTGAATGACTCAGATCACATAACAGAACTTTTGGGAGCTGTTGACAATTTTGGATCAGGCAGTAGCATAATTGTAACAACCAGAGATGAGCAAGTGCTTAAAGCTAGCAAAGCTGATGAGATATATCATCTTAGAGAATTGACTTCAGATGAAGCTCTTGAACTTTTCAATTTGAATGCCTTTAACCAAAGTGATCATCAAAGGGAGTACGATGAACTCTCAAAAAGGATTGTACATTATGCCAAAGGTCTTCCACTAATTCTGAAAGTTTTGGCTCATCGACTACATGGTAAGAATGAGGAAGTATGGGAAAGTGAGATAGACAAGCTTAAAATGGTTCCTCCTACAAAAGTTTATGATGTTATAAAGCTGAGTTATGACGATTTAGATCGCAAAGAGAAACAGATTTTTCTTGATCTTGCATGTTTTGTTTGCAGATCGCGTTTGAAGATAACTATTGACTGTCTAAAATATTTACTGAAAGATGGTGAAAGAGACAACTCAGTGGTTGTTGCACTAGAAAGGCTTAAAGATAAAGCTCTTATAACATTTTCCAAAGATAATTTGTTATGTATGCATGACAGTATACAAGAAATGGCTTGGGAGATTGTTCGTCAAGAGTCTACTGAGAACCCTGTAAACCGCAGCCGCTTGTGGGATCCTGATGACACATATGAAGCTTTGGAAAATGACAAGGTTAGTGAGGCCATTAGAAGCATACAAATTGACTTGAAAGCACTTAAGGAACAAAAGTTAATGCCTCACATATTTGCTAAGATGTGCAGACTAAGATTCATGGAAATACATGGACAAATTTTCTGGGGAAAAGCTTGTGATATTGATATTGGGATCGGGTCGAATGGAAAAACTTTGGGATGGAGTGAAGAATCTGGTGAATTTAAAAGAACTTGA 1890 0.3767 MLYFFVSCSFLCVFLFIFSRLFPKLNGVEKKPISNNNSPKIKYDVFVSFRGEDIRDGFLSHLTEAFDVKKINAFVDDKLEKGEELWPSLVAAIGGSSISLIIFSPEYASSRWCLKELVTILECKEKYGHTVIPVFYHVTPTDVRHQSSQGYKEAFSEHARKRKSEVQLWRRVFEKSADLSGIESSKFRNDADMLKAIIDLVLMRLRKSVVISKGLVGIDKRIADVESLIHRDVESEKARLIGLWGMGGIGKTTLAEEVFNKLRSKYEGCYFLANEREQSSRKGKVSLKEEIFSALLGDVKIDTPNSLPEDIVRRIRQMKVLIILDDVNDSDHITELLGAVDNFGSGSSIIVTTRDEQVLKASKADEIYHLRELTSDEALELFNLNAFNQSDHQREYDELSKRIVHYAKGLPLILKVLAHRLHGKNEEVWESEIDKLKMVPPTKVYDVIKLSYDDLDRKEKQIFLDLACFVCRSRLKITIDCLKYLLKDGERDNSVVVALERLKDKALITFSKDNLLCMHDSIQEMAWEIVRQESTENPVNRSRLWDPDDTYEALENDKVSEAIRSIQIDLKALKEQKLMPHIFAKMCRLRFMEIHGQIFWGKACDIDIGIGSNGKTLGWSEESGEFKRT 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00310 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 466 IPR027417 -
Viun9g00310 629 PRINTS Disease resistance protein signature 240 255 - -
Viun9g00310 629 PRINTS Disease resistance protein signature 314 328 - -
Viun9g00310 629 PRINTS Disease resistance protein signature 407 421 - -
Viun9g00310 629 Coils Coil 556 576 - -
Viun9g00310 629 Gene3D - 372 456 IPR042197 -
Viun9g00310 629 SMART till_3 42 179 IPR000157 GO:0007165
Viun9g00310 629 Pfam TIR domain 42 201 IPR000157 GO:0007165
Viun9g00310 629 SMART AAA_5 237 385 IPR003593 GO:0016887
Viun9g00310 629 Gene3D - 208 367 IPR027417 -
Viun9g00310 629 SUPERFAMILY Toll/Interleukin receptor TIR domain 35 181 IPR035897 -
Viun9g00310 629 Pfam NB-ARC domain 224 437 IPR002182 GO:0043531
Viun9g00310 629 Gene3D - 37 207 IPR035897 -
Viun9g00310 629 FunFam Disease resistance protein (TIR-NBS-LRR class) 39 207 - -
Viun9g00310 629 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 43 595 IPR044974 GO:0006952
Viun9g00310 629 ProSiteProfiles TIR domain profile. 41 205 IPR000157 GO:0007165
Viun9g00310 629 SUPERFAMILY "Winged helix" DNA-binding domain 442 554 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00310 Viun-Chr9 2065099 2068563 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00310 30 595 WRKY Transcription Factor Family AT4G12020 29.319 1.31e-58 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00310 - - vun:114163400 983.786