Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00303 ATGGAGTGGGACAGTGATTCCGATCTCAGCGGAGACGACGACGCCGCTTCCTTTATGCTCAACGACGATGACGATTTCGCCGGACCCCTCCCCTTCCCTGTCCTCCAGACCTCGCCCTGCGGCTTCGTCGTCACCGACGCGCTTGAGCCCGACCACCCTATCATATACGTCAACGCAGTTTTCGAGATGGTCACCGGTTATCGTGCAGAAGAAGTGCTCGGTCGCAACTGTCGTTTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCGTTGGTGGACTCAACTGTTGTTTCCGAAATCAGAAGATGCCTTGACGAAGGGGTTGAATTCAAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACAGATTGCATCTGACACCTATATATGGAGATGATGAGATAACTCATGTAATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGCCCCCTTCCAGGTTCTAAGGTCAAGGAATATACTAAATCATCAGATCAATTTCGTTTGGTGCTTTCCTCATTGAATCCTCTTCATGTTGGGGACCGTAATGTTACTCGTGGAGTTTGTGGAATATTGCAATTAAGTGATGAGGTATTGTCTCTCAAGATACTTGCTCGCTTGACTCCAAGAGATATTGCATCTGTTGGTTCTGTTTGTAAGCAGTTGTATGAGCAAACAAAAAACGAAAACCTTTGGAGAATGGTGTGCCAAAATGCTTGGGGCAGTGAGACTACACGTGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTTGGATGGGGTCGGCTGGCAAGAGAACTGACCACTCTTGAAGCAGCAGCTTGGAGGAAACTGACTGTTGGAGGTGCGGTTGAACCTTCACGCTGTAATTTTAGTGCTTGTGCTGTTGGTAATAGAGTTGTCCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGATACCTTTGTACTGGATCTCAACTCAAGTAATCCTGAGTGGCAACATGTCCAGGTGAGTTCTCCTCCTCCTGGTCGGTGGGGCCACACACTTTCTTGTGTTAATGGTTCTCATTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAATGATGTGTTTGTTCTGGACCTGGATGCAAAGCCTCCAACTTGGCGTGAAATCTCTGGACTGGCACCCCCACTTCCGAGATCTTGGCATAGCTCCTGCACACTTGATGGTACTAAGTTGATAGTTTCTGGTGGCTGTGCTGATTCTGGTGTACTCTTGAGTGATACTTTCCTCCTTGATCTCTCAATGGAGAAACCTGTCTGGAGGGAGATACCAGTAACATGGACTCCACCTTCGCGCCTGGGTCACACACTATCCGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCCCTTCGGTTTCGCTCCAGTGATGTATTCACGATGGATTTAAGTGAGGAGGAGCCCTGTTGGAGATGTGTAACGGGGAGTGGAATGCCAGGCGCTGGAAATCCAGGAGGCATAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTGAGCCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCAGGCCTTCATTCTGCTTCCCAGCTTTACATACTAGACCCGACTGACGAGAAGCCTACATGGAGAATCTTAAATGTACCTGGGCGCCCTCCAAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTTCTAGGTGGTCAAACTGGGGAGGAATGGATGCTTAGTGATCTCCATGAACTTTCCTTGGCATGCTCTGTTATCTAA 1836 0.4837 MEWDSDSDLSGDDDAASFMLNDDDDFAGPLPFPVLQTSPCGFVVTDALEPDHPIIYVNAVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLDEGVEFKGELLNFRKDGSPLMNRLHLTPIYGDDEITHVIGIQFFTEANIDLGPLPGSKVKEYTKSSDQFRLVLSSLNPLHVGDRNVTRGVCGILQLSDEVLSLKILARLTPRDIASVGSVCKQLYEQTKNENLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSDLHELSLACSVI 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00303 611 FunFam Putative LOV domain-containing protein 272 476 - -
Viun9g00303 611 Pfam PAS domain 39 148 IPR000014 -
Viun9g00303 611 Pfam Galactose oxidase, central domain 295 345 - -
Viun9g00303 611 ProSiteProfiles PAS repeat profile. 34 109 IPR000014 -
Viun9g00303 611 Gene3D - 273 497 IPR015915 GO:0005515
Viun9g00303 611 Gene3D - 498 610 IPR015915 GO:0005515
Viun9g00303 611 SUPERFAMILY Galactose oxidase, central domain 281 596 IPR011043 -
Viun9g00303 611 SUPERFAMILY F-box domain 191 260 IPR036047 GO:0005515
Viun9g00303 611 CDD PAS 38 140 IPR000014 -
Viun9g00303 611 NCBIfam PAS domain S-box protein 36 147 IPR000014 -
Viun9g00303 611 Gene3D - 195 243 - -
Viun9g00303 611 Pfam Galactose oxidase, central domain 359 406 - -
Viun9g00303 611 Gene3D PAS domain 32 159 - -
Viun9g00303 611 Pfam Kelch motif 519 566 IPR011498 GO:0005515
Viun9g00303 611 Pfam Kelch motif 452 503 IPR011498 GO:0005515
Viun9g00303 611 FunFam Adagio protein 1 32 159 - -
Viun9g00303 611 Pfam F-box-like 207 245 IPR001810 GO:0005515
Viun9g00303 611 CDD F-box_AtADO-like 198 244 - -
Viun9g00303 611 FunFam Putative LOV domain-containing protein 477 610 - -
Viun9g00303 611 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 31 607 - -
Viun9g00303 611 SUPERFAMILY PYP-like sensor domain (PAS domain) 38 148 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00303 Viun-Chr9 1999034 2004286 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00303 41 149 AGC Kinase Gene Family AT5G58140 36.364 5.86e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00303 K12115 - gmx:100802828 1154.81