Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00300 ATGGCTAAAACCCAAATGCCCCCAGGAGTGCTTACTCCAGAGTCACGATTTATGACACTTGCCATGGATAGATTTTTGAATGATATGGAAAGAGAGAAGCCAACCAGGTTCAATGACCAACATCTAAGGATTGCAACTGATAACTACTCTTACTTGTTGGGGTCAGGAGGTTTTGGATCAGTCTATAAGGGAATTTTTAGCGATGGAACCATTGTGGCTGTGAAGGTTCTACATGGGCGTTCAGACAAGAGAAACGAGGAGCAGTTTATGGCTGAAGTGGGAACAATAGGCAAAATTCATCACTTCAATCTGGTTCGGCTATATGGATTTTGCTTCGAAAGAAACCTGATAGCACTGGTTTATGAATTCATGGGGAATGGTTCTCTTGACAAGTATCTTTTTAACCAAAACAATGTCATAGGATTTGAAAGGCTTCATGAGGTTGCAGTTGGGACAGCCAAAGGAATTGCTTATTTGCATGAAGAGTGCCAACAGAGAATAATACACTATGACATCAAACCAGGAAATATTCTGTTGGATGGAAGCTTCAATCCTAAAGTTGCTGATTTTGGTTTGGCCAAGCTTTGCAATAGAGAAAATACTCATCTAACCATGACAAGGGGAAGGGGGACTCCTGGTTATGCTGCACCAGAACTCTGGATGCCAAATTTTCCTGTGACTCACAAGTGTGATGTTTACAGCTTTGGAATGCTGTTGTTTGAAATCATAGGGAGGAGGAGAAACCTTGATGTTGAAGTTGTTGAAAGCCAAGAGTGGTTTCCAATGTTTGTGTGGAAAAAAATTGATGGTGGAGAGTTGAAGGGGTTGATAATAGCATGTGGAATAGAGGAGAAAGATGAGGAGATAGCTGAGAGAATGGTTAGTGTTGCTCTGTTGTGTGTTCAGTATAGGCCTGATTCAAGGCCTGTGATGAGTGATGTGGTAAAAATGTTGGAAGGTTCAGTGGAAGTTCCAAAACCTTTGAACCCATTTCAGCACTTTATGGATGGGAATTTCTCTGCTCATACAACAGATACTGGTGGTTCTTCTGTTGTTTTAACTGACTCTAGCATTGTACATGCTACTACTTGA 1092 0.413 MAKTQMPPGVLTPESRFMTLAMDRFLNDMEREKPTRFNDQHLRIATDNYSYLLGSGGFGSVYKGIFSDGTIVAVKVLHGRSDKRNEEQFMAEVGTIGKIHHFNLVRLYGFCFERNLIALVYEFMGNGSLDKYLFNQNNVIGFERLHEVAVGTAKGIAYLHEECQQRIIHYDIKPGNILLDGSFNPKVADFGLAKLCNRENTHLTMTRGRGTPGYAAPELWMPNFPVTHKCDVYSFGMLLFEIIGRRRNLDVEVVESQEWFPMFVWKKIDGGELKGLIIACGIEEKDEEIAERMVSVALLCVQYRPDSRPVMSDVVKMLEGSVEVPKPLNPFQHFMDGNFSAHTTDTGGSSVVLTDSSIVHATT 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00300 363 PANTHER OS07G0415500 PROTEIN 25 331 - -
Viun9g00300 363 FunFam serine/threonine-protein kinase PBS1-like 20 123 - -
Viun9g00300 363 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00300 363 FunFam Putative receptor-like protein kinase 124 326 - -
Viun9g00300 363 SUPERFAMILY Protein kinase-like (PK-like) 35 337 IPR011009 -
Viun9g00300 363 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Viun9g00300 363 Gene3D Phosphorylase Kinase; domain 1 22 123 - -
Viun9g00300 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Viun9g00300 363 Gene3D Transferase(Phosphotransferase) domain 1 124 327 - -
Viun9g00300 363 ProSiteProfiles Protein kinase domain profile. 47 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00300 363 Pfam Protein tyrosine and serine/threonine kinase 52 318 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00300 Viun-Chr9 1985513 1987791 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00300 36 331 Receptor kinase-like Gene Family AT5G38280 44.554 2.48e-81 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Viun9g00300 PK_Tyr_Ser-Thr 8.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00300 - - gmx:100819737 569.311