Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00299 ATGTCAACACTCATCTTCAATAAATTTGAAGTTGCGGCTTTAGTCTTCGTCGGTAGGATTCAAACCTTAGATGTATTTTTGTTTTCATCTCATTCTAATATTCTGTGTTTGTTTTTTTATTCTGTCACAAGATTTCTAACTCAGCGTTTTGTTTCAGTTGTGCTTTCAATAGTAGTGAAGGTAGGTATTCTGATTTATGTGTGTCAGAAAAGACAACAGGTTCGTAACAGATTAAGTGCAGATTCGGAATTTCTGACACTGACCATGGATAAATTTCTGAATGACATGGGAAGAGAGAAACCAACGAGGTTCACCGATCAGCAGCTAAGGATTGCAACAGATAACTTCTCTAACTTGTTGGGGTCAGGAAGTTATGGATCTGTTTACAAGGGAGTTTTCAGTAATGGAACAGTGGTGGCTGTGAAGGTTCTAAATGGGAGTTCAGACAAAAAAATTGAAGAGCAGTTCAAGGCAGAAGTAGGAACAATTGGAAGAATTCATCATTTCAATCTGGTTAGGCTCTATGGATTTTGCTTTGAAAGAAATATGATAGCACTGGTTTATGAGTACATGGGAAATGGCTCTCTTGACAGGTATTTGGTGAATGACACAAACAACTTAGGATATGAAAAGCTTCATGAGATTGCAGTTGGTACAGCCAGAGGAATAGCTTATCTGCATGAAGAGTGCCAACAAAGAATAGTCCATTATGACATAAAACCAGAAAATATTCTCTTGGATGGGAATTTCAACCCTAAAGTTGCTGATTTTGGCTTAGCCAAGCTCTGCAACAGGGAAAATACTCATCTGACCTTGACAAAGGGTAGAGGAACTCCTGGTTATGCTGCACCAGAACTTTGGATTCCTAATTTTCCTGTGACTCACAAGTGTGATGTTTATAGTTTTGGAGTACTGCTATTTAAAATCATTGGCAGGAGAAGAAACACTGTTGAGGAACTTGCTGAAAGTGAAGAGTGGTTTCCAATGTTGGTTTGGAAAAAATTTGACACTGGAAAACTGGGGGAGTTAATAATAAAGTGTGGGATAGAGCAGAAAAGTAGAGACATTGCAGAAAGAATGGCTAAGGTAGCTTTGTGGTGTGTGCAATATAGGCCAGAATTCAGGCCTGTAATAGGTCTTGTGGTGAAAATGCTGGAAGGCTCAGTGGAAATTCCAGAACCTATGAACCCATTTCAGCACATGATGGGTGAGATTTTCATTGCACATCCAGTTCAAGAATCACAGACTTATACAACAACTACTTTGTCTGGTTCTATTATGGTAACTGACTCCAACATGCTACGTTCTACTCCTATAATGAGCAAGTATGAGATTGAAATAGCCCCTGCCACTTTGTGA 1359 0.39 MSTLIFNKFEVAALVFVGRIQTLDVFLFSSHSNILCLFFYSVTRFLTQRFVSVVLSIVVKVGILIYVCQKRQQVRNRLSADSEFLTLTMDKFLNDMGREKPTRFTDQQLRIATDNFSNLLGSGSYGSVYKGVFSNGTVVAVKVLNGSSDKKIEEQFKAEVGTIGRIHHFNLVRLYGFCFERNMIALVYEYMGNGSLDRYLVNDTNNLGYEKLHEIAVGTARGIAYLHEECQQRIVHYDIKPENILLDGNFNPKVADFGLAKLCNRENTHLTLTKGRGTPGYAAPELWIPNFPVTHKCDVYSFGVLLFKIIGRRRNTVEELAESEEWFPMLVWKKFDTGKLGELIIKCGIEQKSRDIAERMAKVALWCVQYRPEFRPVIGLVVKMLEGSVEIPEPMNPFQHMMGEIFIAHPVQESQTYTTTTLSGSIMVTDSNMLRSTPIMSKYEIEIAPATL 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00299 452 Gene3D Transferase(Phosphotransferase) domain 1 191 395 - -
Viun9g00299 452 ProSiteProfiles Protein kinase domain profile. 114 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00299 452 Gene3D Phosphorylase Kinase; domain 1 89 190 - -
Viun9g00299 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Viun9g00299 452 ProSitePatterns Protein kinases ATP-binding region signature. 120 142 IPR017441 GO:0005524
Viun9g00299 452 SUPERFAMILY Protein kinase-like (PK-like) 97 386 IPR011009 -
Viun9g00299 452 PANTHER OS07G0415500 PROTEIN 52 397 - -
Viun9g00299 452 SMART serkin_6 114 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00299 452 Pfam Protein kinase domain 118 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00299 452 FunFam Putative receptor-like protein kinase 191 393 - -
Viun9g00299 452 FunFam serine/threonine-protein kinase PBS1-like 88 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00299 Viun-Chr9 1983202 1985103 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00299 103 398 Receptor kinase-like Gene Family AT5G38280 41.914 2.52e-74 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Viun9g00299 Pkinase 3.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00299 - - gmx:100803355 605.52