Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00298 ATGTCAACTGGTGCAGTAATTGGGGTCATCATCATAGTTGTGGTGATTTTGGTGAAGATAGGTATTTTGATCTGTGTGTGCAGAAAAAGAAATCAGAAGAATGATAGATCAGTACTTCCTGGTTCAAAATTTCTGACTCTGACTATAAATAAATTTCTTAACGACATGGAAAGGGAGAAGCCAATCAGATTCACTGATCAACAACTAAGGATTGCAACTGATAACTACTCGAACTTGTTGGGGTCAGGAGGTTTTGGAACAGTTTACAAGGGAATTTTCAGTAATGGAACCATTGTTGCAGTGAAGGTTCTGCGAGGGACTTCAGACAAGAAAATCGAGGAGCAGTTTATGGCAGAAGTGGGAACCATTGGCAGAATTCATCATTTCAATCTTGTAAGACTCCATGGATTTTGCTTTGAAGAAAACCTGGTAGCACTGGTGTATGAGTACATGGGTAATGGCTCTCTTGATAGGTACTTGTTCCATGAAAAGAAGACCTTAGGATATGAAAAGCTTCATGAGATTGCAGTGGGAACAGCTAGAGGCATTGCTTATTTGCATGAGGAGTGCCAACAAAGAATAATCCATTACGATATAAAACCAGGAAATATTCTCTTGGACAGGAATTTCAACCCTAAAGTTGCTGATTTCGGTTTAGCCAAACTCTGCAACAGGGACAACACTCATATTACCATGACTAAAGGTAGGGGAACTCCAGGTTATGCTGCACCTGAGCTTTGGATGCCCTTTCCCATAACTCCCAAGTGTGATGTTTATGGTTTTGGCATGCTGCTATTTGAAATCATAGGCAGAAGAAGAAACATTGATATCAAACTTGCTGAAAGCCAAGAGTGGTTTCCAATAAGGGTTTGGGAAAAATTTGATGCTGGTCAACTGGGGGAGTTGATATCAATCTGTGGGATAGAGGAGAAAGATAAGAAGGTTGCAGAAAGAATGATTAAGATAGCTTTGTGGTGTGTTCAGTATAGGCCAGAATTAAGGCCAATAATGAGTGTTGTGGTGAAAATGCTGGAAGGTTCTGTGGAAATTCCAGAACCTGACAACCCTTTTCAGCACCTCATGGGTGGGATTGCCATTGCTCATCCAGTTCCAGTTTCACAGACCTATAATACAGCAAGTATTTCATCTGCTTCTTCTGTTATGGTAACAAACTCCAGCATTGTATGTGCTACTCCTATTATGAGGAAGTACGGCATTGAATTAGCCTCTAGCAATGTGTGA 1242 0.4066 MSTGAVIGVIIIVVVILVKIGILICVCRKRNQKNDRSVLPGSKFLTLTINKFLNDMEREKPIRFTDQQLRIATDNYSNLLGSGGFGTVYKGIFSNGTIVAVKVLRGTSDKKIEEQFMAEVGTIGRIHHFNLVRLHGFCFEENLVALVYEYMGNGSLDRYLFHEKKTLGYEKLHEIAVGTARGIAYLHEECQQRIIHYDIKPGNILLDRNFNPKVADFGLAKLCNRDNTHITMTKGRGTPGYAAPELWMPFPITPKCDVYGFGMLLFEIIGRRRNIDIKLAESQEWFPIRVWEKFDAGQLGELISICGIEEKDKKVAERMIKIALWCVQYRPELRPIMSVVVKMLEGSVEIPEPDNPFQHLMGGIAIAHPVPVSQTYNTASISSASSVMVTNSSIVCATPIMRKYGIELASSNV 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00298 413 SUPERFAMILY Protein kinase-like (PK-like) 57 345 IPR011009 -
Viun9g00298 413 Gene3D Phosphorylase Kinase; domain 1 49 150 - -
Viun9g00298 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Viun9g00298 413 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 6 354 - -
Viun9g00298 413 FunFam serine/threonine-protein kinase PBS1-like 48 150 - -
Viun9g00298 413 SMART serkin_6 74 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00298 413 Pfam Protein kinase domain 78 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00298 413 ProSiteProfiles Protein kinase domain profile. 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00298 413 ProSitePatterns Protein kinases ATP-binding region signature. 80 102 IPR017441 GO:0005524
Viun9g00298 413 Gene3D Transferase(Phosphotransferase) domain 1 151 354 - -
Viun9g00298 413 FunFam Putative receptor-like protein kinase 151 352 - -
Viun9g00298 413 CDD STKc_IRAK 80 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00298 Viun-Chr9 1978831 1980382 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00298 63 357 Receptor kinase-like Gene Family AT5G38280 40.594 2.15e-74 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Viun9g00298 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00298 - - gmx:100803355 717.613