Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00297 ATGAATTTTATCCACATTGAGAATATTTTGAGGAACATGGAAAGAGAAAAGCCAATCAGGTTCACTGGTGAGCTGCTAAGGATTGCAACAGATAACTACTCTACATCATTAGGGTCAGGAGGTTTTGGAGAAGTTTACAAAGGAAATTTAAGTGATGGAACAACAGTGGCTGTGAAGGTTCTACGTGCAAATTCTGACAAGAGAATCAAGGAACAGTTTATGGCAGAAGTGGGTACAATTGGAAAAGTTCATCATTTCAACCTTGTCAAGTTGTATGGATTTTGCTTTGAGAAAGACCTGACAGCACTGGTTTATGAGTACATGAGTAATGGATCTCTTGACAAGTATCTGTTTCACGAAAACAAGACTCTGGGATACGAAAAGCTTCATGAGATTGCAGCTGGGACAGCGAGAGGCATTGCATACTTGCATGAAGATTGTGAACAAAGAATAGTCCACTATGATATCAAACCAGGAAATATTCTTTTGGACAAGAACTTCAATCCCAAAGTTGCTGATTTTGGATTGGCTAAACTCTGCAACAGGGACAATACTCATATAACTATGACAGGAGGAAGGGGCACTCCTGGTTATGCTGCACCTGAACTTTGGATGCCATTTCCTGTGACTCACAAGTGTGATGTTTATAGCTTTGGAATGCTGTTGTTTGAAATCATAGGGAGGAGAAGAAACCTTGACATTAACCTTCCGCAAAGCGAAGAGTGGTTTCCAGTGTGGGCTTGGAAGAGATATGATGCTGGAGAATTGGAAGTGTTAATGAATGCTTGTAAGATTGAGGAGAGGCATAAGAAGATGGCAGAAAGAATGGTGAAGGTAGCTTTGTTTTGTGTTCAGTATAGGCCAGAAACAAGGCCAATTATGAGTGATGTGGTGAAAATGTTGGAAGGTTCAGTTGAAATTTCTCAACCATCTAACCCGTTTCAGCACATAATAGAAGGAACTTTTCAGGGTTCTTCTGATCATGCATCCCGAACTGATGTAAATACAAGTATCAATTCTAGTTCTTCTTTTATGGTAACCGAACCAAGCATTGTATATGACATTCCTCCGATGAGGAATGATATTGAATTGGTCTCTACCATTGCTGGTTAA 1113 0.3989 MNFIHIENILRNMEREKPIRFTGELLRIATDNYSTSLGSGGFGEVYKGNLSDGTTVAVKVLRANSDKRIKEQFMAEVGTIGKVHHFNLVKLYGFCFEKDLTALVYEYMSNGSLDKYLFHENKTLGYEKLHEIAAGTARGIAYLHEDCEQRIVHYDIKPGNILLDKNFNPKVADFGLAKLCNRDNTHITMTGGRGTPGYAAPELWMPFPVTHKCDVYSFGMLLFEIIGRRRNLDINLPQSEEWFPVWAWKRYDAGELEVLMNACKIEERHKKMAERMVKVALFCVQYRPETRPIMSDVVKMLEGSVEISQPSNPFQHIIEGTFQGSSDHASRTDVNTSINSSSSFMVTEPSIVYDIPPMRNDIELVSTIAG 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00297 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Viun9g00297 370 FunFam serine/threonine-protein kinase PBS1-like 6 107 - -
Viun9g00297 370 SUPERFAMILY Protein kinase-like (PK-like) 13 302 IPR011009 -
Viun9g00297 370 Gene3D Transferase(Phosphotransferase) domain 1 108 317 - -
Viun9g00297 370 CDD STKc_IRAK 37 303 - -
Viun9g00297 370 SMART serkin_6 31 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00297 370 ProSiteProfiles Protein kinase domain profile. 31 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00297 370 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 13 311 - -
Viun9g00297 370 PIRSF TyrPK_CSF1-R 119 229 - -
Viun9g00297 370 PIRSF TyrPK_CSF1-R 269 353 - -
Viun9g00297 370 PIRSF TyrPK_CSF1-R 32 136 - -
Viun9g00297 370 Gene3D Phosphorylase Kinase; domain 1 6 107 - -
Viun9g00297 370 FunFam Putative receptor-like protein kinase 108 309 - -
Viun9g00297 370 Pfam Protein tyrosine and serine/threonine kinase 34 301 IPR001245 GO:0004672|GO:0006468
Viun9g00297 370 ProSitePatterns Protein kinases ATP-binding region signature. 37 59 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00297 Viun-Chr9 1976955 1978291 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00297 20 330 Receptor kinase-like Gene Family AT5G38280 41.176 1.93e-78 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Viun9g00297 PK_Tyr_Ser-Thr 3.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00297 - - vun:114162625 758.059