Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00296 ATGAGTTTTCGATTTTCTTCTCCTCCTGTCCAGTTTTACGATTTTCAGACTCATCCGCAAGACGATTTTCAGACTCAAGCGCAAAACGAGTTTGACCATTTTATGGAATGGACAATAATAGCGTCTATTGCTTCTGGGGTGGTGGGACTCGTAGCTATTATAGCAATAGTATATGCCATTATTCAATGCTTAAAGAAGGCAGGGGAAGCAATTCCTGCATATGCCCAGCTTCCTAGCACAGAGAATAATAATCATAAAACATCAAATTCATTTCCTTCAACCAGAGAAGTTGAAGTAGTGATAACACCAGCTTCCACAGTTCAAAATTCGAAAACTGAGTTTGCAACAATGGAAAGATTCCTGAGCAACATCAACAAGGAGAAACCCATCAGATTCTCTCCTGAGGAACTGGATATAGTTACATGGAACTACTCAACCATATTGGGTTCAGGTGCTTTTGGGGTTGTCTACAAAGGGAAATTGTGCAATGGAGATGATGTGGCTGTAAAAGTTATCAACAGTTTGGACATGGGAATGGAAGAGCAAATAAAAGCAGAGATTGGAACCCTTGGAAGAACCTACCATGTCAATCTGGTGAGGCTTTATGGCTTCTGCTTCCACCGTGACAAGAGAGCTCTAGTTTATGAATATGTGGAAAATGGGTCCTTGGACAAGCACTTGTTTGGTAGCCAGAACCAGGACATTGAGTTGAGGAAGCTTCTTGAGATTGCAATAGGAACAGCAAAAGGAATTGCTTATTTACACGAAGAGTGTCAAAAGAGAATAATCCATTATGATATCAAACCAGAGAATGTTCTTCTTGACATGAATTTGGAGGCAAAGGTGGCAGATTTTGGCCTGGCTAAGCTTTGCAGCAGAGAAAATAACGTTTCGGTAAACACACACTTTAGAGGAACAAGGGGATATGCTGCACCAGAAATGTGGAAGCTTTCTCCGGTGACTCACAAGTGCGATGTTTATAGTTTTGGCATTCTCCTGTTTGAGATGGTTGGAAGGAGAAGGCATTTTGATGATAGCTACAGAGAATCACAACAGTGGTTTCCACAGTGGACATGGGATATGTTTGAGAATAATGAGTTATCTGTGATGCTTTCACTTTGTGGAATTGAGGAGAAAGAGAAGGAGAAAGGTGAGAGAATGTTAAAGGTGGCTCTGTGGTGTGTTCAGTATTCACCTGATGAAAGACCTTTTATGAGTACTGTGGTGAAGATGCTAGAGGGTGAGATTGAAATTTCTCCACCTCCATTTCCCTTCCAAAACCTGGTGTCTGTTAAGCCAAACCTCACTCAAAAAGAAAGTAGTTCTGAAGATTCAGATGCCACCCAGTCATGGGAAACAACATCATACCCGGAATATGCCTCCAAAATCAAGCGCAATGCATTTGAGATTGAAGAACTTGCTTAG 1425 0.4133 MSFRFSSPPVQFYDFQTHPQDDFQTQAQNEFDHFMEWTIIASIASGVVGLVAIIAIVYAIIQCLKKAGEAIPAYAQLPSTENNNHKTSNSFPSTREVEVVITPASTVQNSKTEFATMERFLSNINKEKPIRFSPEELDIVTWNYSTILGSGAFGVVYKGKLCNGDDVAVKVINSLDMGMEEQIKAEIGTLGRTYHVNLVRLYGFCFHRDKRALVYEYVENGSLDKHLFGSQNQDIELRKLLEIAIGTAKGIAYLHEECQKRIIHYDIKPENVLLDMNLEAKVADFGLAKLCSRENNVSVNTHFRGTRGYAAPEMWKLSPVTHKCDVYSFGILLFEMVGRRRHFDDSYRESQQWFPQWTWDMFENNELSVMLSLCGIEEKEKEKGERMLKVALWCVQYSPDERPFMSTVVKMLEGEIEISPPPFPFQNLVSVKPNLTQKESSSEDSDATQSWETTSYPEYASKIKRNAFEIEELA 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00296 474 PANTHER OS07G0415500 PROTEIN 110 425 - -
Viun9g00296 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Viun9g00296 474 FunFam Putative receptor-like protein kinase 218 420 - -
Viun9g00296 474 SMART serkin_6 142 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00296 474 MobiDBLite consensus disorder prediction 434 453 - -
Viun9g00296 474 SUPERFAMILY Protein kinase-like (PK-like) 126 413 IPR011009 -
Viun9g00296 474 Gene3D Phosphorylase Kinase; domain 1 102 217 - -
Viun9g00296 474 Gene3D Transferase(Phosphotransferase) domain 1 218 419 - -
Viun9g00296 474 ProSitePatterns Protein kinases ATP-binding region signature. 148 170 IPR017441 GO:0005524
Viun9g00296 474 ProSiteProfiles Protein kinase domain profile. 142 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00296 474 Pfam Protein kinase domain 145 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00296 Viun-Chr9 1973099 1975537 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00296 131 462 Receptor kinase-like Gene Family AT5G38280 39.003 6.01e-80 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Viun9g00296 Pkinase 2.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00296 - - aprc:113852543 702.205