Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00295 ATGGCAGGTGTATCCTTTGTGATATTTTGTATTTTTATATGGCTACGGCCCATCTTTGATGTTCGTCAAAAAGACTCACAATTTATGACACTCACCGTGAATAAATTTCTAAACGAGATGGAAAAGGAGAAGGTTATGAGGGTTACTGAAGAGCACCTAAGAATTGCAACTGATAACTATTCTTACTTGATGGGTTCAGGAGGTTTTGAAAAAGTCTATAAGGGAATTTTTAGTGATGGAACCATTGTAGCCGTCAAGGTTCTGCATGCGAATTCTAAAGACAGAATTCAGGAGCAGATTATGGCTGAAGTGGGAACAATAGGAAAAGTTCATCATTTCAATCTGGTTCGACTCTACGGTTTTTGTTTGGAAAAAAACTTCACAGCACTGGTTTATGAGTACATGGTGAATGGTTCTCTTGACAAGTTTTTGTTTAATCCAGAAAATGCCATAGCTTTTGAAAAGCTTTATGATATTGCAATTGGGACAGCCAAAGGCATTTCTTACTTGCATGAAGAGTGTCAACAAAGAATTATCCACTACGACATCAAACCCGGAAATATTCTCTTGGATAGAAACTTCAATGCTAAAGTTGCAGATTTTGGCTTAGCCAAACTATGCAACAGAGAAAATACTCACATTACCTTGACTAAGGGTAGAGGCACTCCTGGTTATGCTGCACCTGAGCTTTGGTTGCCAAATTTTCCAGTAACTCAAAAGTGTGATGTTTACAGCTTCGGGATGCTGTTGTTTGAAATCCTTGGAAGGAGAAGAAACTTTGAGATAGACCTTGCTGAAAGCCAGGAGTGGTTTCCAATGTGGATTTGGAAAAAATTTGAGGCCGAAGAAGCAGAAGAATTGATGGTAGCATGTGGGATAGATGATCAAAATAAAGAAACTGCAGAAAGAATGGTGAAGGTAGCTCTGTCATGTGTTCAGTATAAGCACGAATCAAGACCTGTAAGGAGTGTTGTGGTGAAAATGTTAGAAGGTTCAGTTGAAATTCCGAAACCTCAAAACCCTTTTCCGCACCTTATTCATGAGATTCTTCCACTGCCAGAATCATCTGGCAACACTTATACAAGTACTGTTCAAGGCTCTTCAGGGATGGTAACAGAATCCAGCCATGAACCTTCTTCTCTTGTTGTGACTAAGTTCGAGATTGAATCAGCCTCTACCTAA 1182 0.3934 MAGVSFVIFCIFIWLRPIFDVRQKDSQFMTLTVNKFLNEMEKEKVMRVTEEHLRIATDNYSYLMGSGGFEKVYKGIFSDGTIVAVKVLHANSKDRIQEQIMAEVGTIGKVHHFNLVRLYGFCLEKNFTALVYEYMVNGSLDKFLFNPENAIAFEKLYDIAIGTAKGISYLHEECQQRIIHYDIKPGNILLDRNFNAKVADFGLAKLCNRENTHITLTKGRGTPGYAAPELWLPNFPVTQKCDVYSFGMLLFEILGRRRNFEIDLAESQEWFPMWIWKKFEAEEAEELMVACGIDDQNKETAERMVKVALSCVQYKHESRPVRSVVVKMLEGSVEIPKPQNPFPHLIHEILPLPESSGNTYTSTVQGSSGMVTESSHEPSSLVVTKFEIESAST 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00295 393 SUPERFAMILY Protein kinase-like (PK-like) 43 329 IPR011009 -
Viun9g00295 393 Pfam Protein kinase domain 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00295 393 ProSiteProfiles Protein kinase domain profile. 58 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00295 393 Gene3D Phosphorylase Kinase; domain 1 32 134 - -
Viun9g00295 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Viun9g00295 393 Gene3D Transferase(Phosphotransferase) domain 1 135 339 - -
Viun9g00295 393 PANTHER OS07G0415500 PROTEIN 7 342 - -
Viun9g00295 393 SMART serkin_6 58 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00295 393 FunFam Putative receptor-like protein kinase 135 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00295 Viun-Chr9 1971028 1972459 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00295 47 351 Receptor kinase-like Gene Family AT5G38280 39.744 1.42e-72 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Viun9g00295 Pkinase 2.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00295 - - gmx:100819737 595.119