Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00294 ATGTCCGACACCTCCAGTACAACGACAGATAACAGCAACCATTCTGGCTATTCCGCAATTGTAATTGTCATTGTGATTGTTGTCTTTATTGTGAAGATTAGTGTTTGCTTTTGGGTATTGCATGTATGCCTAAAAAGAAATCAGGTTAATGGTGGTTCTGGATTATTTAAGCAAACAGGAACACCAGATAAACAATTTATGACACTCACTATGGATAAATTTCTGAATGACATGGAAAGGGAGAAGCCAATCAGGTTCACTGATCAGCAGCTAAGGATTGCAACTGATAATTACTCATATCATTTGGGTTCAGGAGGTTTTGGGTCTGTTTACAAAGGAAGTTTTAGTAATGGAACCCTTATAGCTGTGAAAGTTCTACTTGGGAGTTCTGACAAAAGAGTTGATGAACAGTTTATGGCAGAAGTGGGTACCATTGGTAAAGTCCATCATTTCAATCTAGTTCGTCTATATGGGTTTTGCTTTGAAAGACACTTGAGAGCACTGGTTTACGAGTACATGGTGAATGGCCCGCTTGAGAAGTACCTATTCCATGAAAGCACGACCTTATCATTCGAAAAGCTCCATGAGATCGCAATTGGTACTGCAAGAGGCATCGCTTACTTGCATGAAGAGTGTCAACAGAGAATAATCCACTACGATATCAAACCAGGAAATATTCTCTTGGATAGGAACTTTTGTCCCAAAGTTGCAGATTTTGGTTTGGCCAAGCTTTGCAACAGGGACCATACTCATATAACCATGACTGGGGGTAGGGGCACCCCTGGTTATGCTGCACCTGAACTTTGGTTGCCCTTTCCTGTGACTCACAAGTGTGATGTTTACAGCTTTGGCATGCTGCTCTTTGAAATCATTGGAAGGAGGAAAAACCATAACATTAACCTTCCAGAAAGTCAGGTTTGGTTTCCAATGTTGGTTTGGGAAAAATTTGCTGCTGAAGAAGTGGAGGAGTTGATAAGTTCATGTGGGGTAGAGGACAAAGATAGGGAGATTGCAGAAAGAATTGTTAAAGTAGCTTTGTCATGTGTTCAGTATAGGCCAGAAGCAAGACCTATAATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCTGTTGAAGTTCTAAAGCCTCAAAACCCATTTCAGTACCTGATGGGTTGGGTTCCACCCTCTCCTCATACCGACACAAATGTGAGTTCTGACTCTTCAGCATTGGTATCCAAATCAGTCCCTGTACTTCCCACACATGGTATGACCCACGAGATTGAATTAGCGTCTGCATAA 1278 0.4147 MSDTSSTTTDNSNHSGYSAIVIVIVIVVFIVKISVCFWVLHVCLKRNQVNGGSGLFKQTGTPDKQFMTLTMDKFLNDMEREKPIRFTDQQLRIATDNYSYHLGSGGFGSVYKGSFSNGTLIAVKVLLGSSDKRVDEQFMAEVGTIGKVHHFNLVRLYGFCFERHLRALVYEYMVNGPLEKYLFHESTTLSFEKLHEIAIGTARGIAYLHEECQQRIIHYDIKPGNILLDRNFCPKVADFGLAKLCNRDHTHITMTGGRGTPGYAAPELWLPFPVTHKCDVYSFGMLLFEIIGRRKNHNINLPESQVWFPMLVWEKFAAEEVEELISSCGVEDKDREIAERIVKVALSCVQYRPEARPIMSVVVKMLEGSVEVLKPQNPFQYLMGWVPPSPHTDTNVSSDSSALVSKSVPVLPTHGMTHEIELASA 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00294 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Viun9g00294 425 FunFam Putative receptor-like protein kinase 173 374 - -
Viun9g00294 425 PANTHER OS07G0415500 PROTEIN 10 379 - -
Viun9g00294 425 ProSitePatterns Protein kinases ATP-binding region signature. 102 124 IPR017441 GO:0005524
Viun9g00294 425 FunFam serine/threonine-protein kinase PBS1-like 67 172 - -
Viun9g00294 425 SUPERFAMILY Protein kinase-like (PK-like) 86 401 IPR011009 -
Viun9g00294 425 ProSiteProfiles Protein kinase domain profile. 96 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00294 425 Gene3D Transferase(Phosphotransferase) domain 1 173 377 - -
Viun9g00294 425 Pfam Protein tyrosine and serine/threonine kinase 100 366 IPR001245 GO:0004672|GO:0006468
Viun9g00294 425 SMART serkin_6 96 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00294 425 Gene3D Phosphorylase Kinase; domain 1 70 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00294 Viun-Chr9 1965747 1967357 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00294 85 381 Receptor kinase-like Gene Family AT5G38280 41.311 1.25e-77 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Viun9g00294 PK_Tyr_Ser-Thr 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00294 - - gmx:100305451 633.639