Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00292 ATGGCAGAAAATATTAAGAGAAGCAGCTTCGAAGTGTTGGGAATGTGCTGTGCTACAGAAGCAGCACTGGTTGAAAGAATTGTGAAGCCTCTTCATGGCGTAAAACATGTCACTGTGATAGTCCCTACACGAACAGTCACTGTTGTCCATGATGTTCTCTTCATTTCTGATTCACAAATAGCTGATGCACTGAATGCTGCAAGGCTTGAAGCTAGTTTGAGACTGCAGGGAGAAACTGATAATGAAAAGAAATGGCCAGATTTAACGACAATGGTGTGTGGGTTGTTTCTGGCACTTTCTTTCTTGAAATATATATATCACCCTTTGGAATGGTTGGCACTTGTTTCTGTTGTCATTGGCTTCCCTAAGGTTCTACTCAGGGCCATTGCATCCATTAAGGCTCTTACTCTTAATATCAACATTCTGGTTCTATTGGCAGTGTGTAGTACTGCTGCTTTACAAGATTTTTGGGAGGCTGGTGTCATCATCTTCTTATTCTCCATTGCTCAATGGCTTGAGACAAGAGCAACTCACAAGGCAAAGGTTGCAATGTCCTCTTTGACTAGCATGGCTCCACAAAAGGCTGTTATTGCTGAAACTGGGGAACGTGTTGACGTCAATGATGTTAACATCAACACCATACTTGCAGTCAAGTCGGGTGATGCTATTCCTCTCGATGGAATCGTGGTGGAAGGAAAGTGTGAAGTTGATGAAAAGATGTTAACAGGAGAATCATTACCTGTGATCAAAGAGTTTGATTCAGTAGTGTGGGCTGGAACTATTAATGTGAATGGATATATAAGTGTGAAAACTACAGTGCTGGCAAAAGACACGGTGGTGGCTAGAATGTCAAAACTTGTTGAAGAGGCCTCTAGCAGAAAATCTCGAACACAAAGATTCATAGATAATTTTGCTAAGTACTATATTCCTGCTGTTGTTTTGATTTCAGCTAGCATTGCTGTGGTTCCAGCTGCATTAGAAGTTCCTGATATAAAACCTTGGTTTCATCTTGCAATTGTGGTTTTGTTAAGTGCATGTCCTTGTGCTCTCATCCTATCCACCCCTGTTGCAATCTTTTGTGCTCTCACAAAAGCTGCAACAAATGGGTTACTACTGAAAGGTGGAGATTACATTGAAACATTTTCTGGCATTAAGACAGTGGCTTTTGATAAAACTGGAACAATAACAAGAGGAGAGTTCACAGTGACAGATTTTTCTCTTGTAGATGACATTAGCATTGAAACTTTACTGTACTGGGTTTCAAGTATCGAGAGTAAATCAAGTCATCCTATGGCAGCTGCACTAGTGGAATATGGAATGTCTAATTCTGTCAAGCCAATCCCTGAAAATGTTGAGAATTTTGAAAATTTTGCTGGTGAAGGAGTTTTTGGTACAATTGATGGGAAGGATATTTATATTGGCAATAGAAGAATTGGTGCTAGGGCTGACTCCGAAAGAGTTGATTGTCACTTGCAATCTCAAAGCCATGAAATTTCTACCCAGAAACGATATTGTGGACCGACTCTGGTTGGAGTCTTCAGCTTAGTTGATACTTGCAGATCAGGTGCTTTGGAGGCAATAGAAGAGCTAAACTTGTTAGGCGTGAGATCTGTCATGCTAACAGGAGATAGCACTCAAGCAGCTATGTATGTTCAGAGTCAGCTTATTCTGTGCAGTTGA 1680 0.4083 MAENIKRSSFEVLGMCCATEAALVERIVKPLHGVKHVTVIVPTRTVTVVHDVLFISDSQIADALNAARLEASLRLQGETDNEKKWPDLTTMVCGLFLALSFLKYIYHPLEWLALVSVVIGFPKVLLRAIASIKALTLNINILVLLAVCSTAALQDFWEAGVIIFLFSIAQWLETRATHKAKVAMSSLTSMAPQKAVIAETGERVDVNDVNINTILAVKSGDAIPLDGIVVEGKCEVDEKMLTGESLPVIKEFDSVVWAGTINVNGYISVKTTVLAKDTVVARMSKLVEEASSRKSRTQRFIDNFAKYYIPAVVLISASIAVVPAALEVPDIKPWFHLAIVVLLSACPCALILSTPVAIFCALTKAATNGLLLKGGDYIETFSGIKTVAFDKTGTITRGEFTVTDFSLVDDISIETLLYWVSSIESKSSHPMAAALVEYGMSNSVKPIPENVENFENFAGEGVFGTIDGKDIYIGNRRIGARADSERVDCHLQSQSHEISTQKRYCGPTLVGVFSLVDTCRSGALEAIEELNLLGVRSVMLTGDSTQAAMYVQSQLILCS 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00292 559 NCBIfam heavy metal translocating P-type ATPase 139 555 IPR027256 GO:0006812|GO:0016020|GO:0019829
Viun9g00292 559 Pfam E1-E2 ATPase 198 367 - -
Viun9g00292 559 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 390 488 IPR023299 GO:0000166
Viun9g00292 559 PRINTS P-type cation-transporting ATPase superfamily signature 511 522 - -
Viun9g00292 559 PRINTS P-type cation-transporting ATPase superfamily signature 388 402 - -
Viun9g00292 559 PRINTS P-type cation-transporting ATPase superfamily signature 533 543 - -
Viun9g00292 559 PRINTS P-type cation-transporting ATPase superfamily signature 237 251 - -
Viun9g00292 559 FunFam Putative cadmium/zinc-transporting ATPase 3 2 75 - -
Viun9g00292 559 Gene3D - 399 519 IPR023299 GO:0000166
Viun9g00292 559 SUPERFAMILY HMA, heavy metal-associated domain 3 73 IPR036163 GO:0046872
Viun9g00292 559 SUPERFAMILY HAD-like 382 555 IPR036412 -
Viun9g00292 559 Pfam haloacid dehalogenase-like hydrolase 384 554 - -
Viun9g00292 559 FunFam Putative cadmium/zinc-transporting ATPase 3 399 519 - -
Viun9g00292 559 PRINTS Cadmium-transporting ATPase signature 21 42 IPR027256 GO:0006812|GO:0016020|GO:0019829
Viun9g00292 559 PRINTS Cadmium-transporting ATPase signature 174 194 IPR027256 GO:0006812|GO:0016020|GO:0019829
Viun9g00292 559 PRINTS Cadmium-transporting ATPase signature 10 19 IPR027256 GO:0006812|GO:0016020|GO:0019829
Viun9g00292 559 PRINTS Cadmium-transporting ATPase signature 253 269 IPR027256 GO:0006812|GO:0016020|GO:0019829
Viun9g00292 559 PRINTS Cadmium-transporting ATPase signature 272 286 IPR027256 GO:0006812|GO:0016020|GO:0019829
Viun9g00292 559 NCBIfam HAD-IC family P-type ATPase 161 558 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun9g00292 559 Gene3D - 379 555 IPR023214 -
Viun9g00292 559 ProSitePatterns E1-E2 ATPases phosphorylation site. 390 396 IPR018303 -
Viun9g00292 559 SUPERFAMILY Calcium ATPase, transduction domain A 202 287 IPR008250 -
Viun9g00292 559 Gene3D - 2 75 - -
Viun9g00292 559 ProSiteProfiles Heavy-metal-associated domain profile. 6 72 IPR006121 GO:0046872
Viun9g00292 559 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 3 555 - -
Viun9g00292 559 Gene3D - 177 291 - -
Viun9g00292 559 CDD HMA 10 72 IPR006121 GO:0046872
Viun9g00292 559 FunFam Copper-transporting ATPase 1, putative 177 291 - -
Viun9g00292 559 NCBIfam cadmium family heavy metal-translocating P-type ATPase 139 555 - -
Viun9g00292 559 SUPERFAMILY Calcium ATPase, transmembrane domain M 139 382 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00292 Viun-Chr9 1959990 1964122 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00292 2 555 Primary Pumps ATPases AT4G30110 57.194 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00292 K01534 - gmx:100815324 964.14