Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00291 ATGAAGTATATTCGGGGGAACAGCTTCAAGAGGCTTTTCTCGTTTGGAAAACGTGGGTTTGGGGAAGAAAACGATGCTGGGTTGGTGGCTCCTTCATGTGAAGAGCACCCTCCAAGACCCTCTTGGAAATGCTTCTCCTTTAAAGAGTTGTTTGATGCCACCAATGCTTTCTGCTCAGAGAATTTGGTTGGGAGAGGAGGGTATGCAGAGGTTTATAAGGGAACGTTGCGTGGTGGTGAGGAAGTTGCTGTGAAGAGGCTCACCAGAACTTCAACTGATGAGAGAAAGGAGAAGGAGTTTCTGATAGAGATCGGCACAATAGGTCACGTGCGCCATGCCAACGTGTTGCCTCTTCTCGGGTGTTGCATTGACAATGGACTTTACCTCGTTTTTGAGCTATCCACCGTTGGTTCCGTTGCTTCTGTTATTCACGATGAGAACTTGCCTCCTTTAGAATGGAAAACAAGGTATAAGATAGCTCTTGGGACAGCACGTGGTCTTCACTACTTGCACAAAGGTTGCAAGAGGAGGATAATTCATAGGGACATCAAGGCCTCAAACGTTTTGTTAACAGCAGATTTTGAACCAAAGATATCTGATTTTGGACTAGCAAGGTGGCTTCCATCTCAGTGGACTCACCATTCAATAGCCCCAATAGAAGGCACATTTGGGCATTTGGCACCAGAGTACTACATGCATGGAGTTGTGGATGAGAAGACAGATGTATTTGCCTTTGGTGTGTTCTTGCTTGAAATCCTCTCTGGAAGGAAACCAGTGGATGGGTCTCACCAAAGCGTGCACAGCTGGGCTAAACCAATACTAAACAAAGGGGAGATAGAAAAAGTGGTAGATCCAAGGCTTGGAGGGGCTTATGATGTGACACAGTTTAATAGAGTAGCCTTTGCTGCATCCCTGTGCATTCGGGCATCTGCAACTTGCAGACCTACCATGAGTGAGGTGGTGGAGGTAATGGAGAAGTGGGAAATAGATAAAGAGAAGTGGGAAATGGCAGAAGAGAAGGAAGAAGAAGTGGAGTTATGGGGTTTTGAGGATCTGGAATATGCACATGACACTTCTTTTTCAATGTCTCTACCTGACTCAGTTGGAAGTACTTAG 1116 0.4588 MKYIRGNSFKRLFSFGKRGFGEENDAGLVAPSCEEHPPRPSWKCFSFKELFDATNAFCSENLVGRGGYAEVYKGTLRGGEEVAVKRLTRTSTDERKEKEFLIEIGTIGHVRHANVLPLLGCCIDNGLYLVFELSTVGSVASVIHDENLPPLEWKTRYKIALGTARGLHYLHKGCKRRIIHRDIKASNVLLTADFEPKISDFGLARWLPSQWTHHSIAPIEGTFGHLAPEYYMHGVVDEKTDVFAFGVFLLEILSGRKPVDGSHQSVHSWAKPILNKGEIEKVVDPRLGGAYDVTQFNRVAFAASLCIRASATCRPTMSEVVEVMEKWEIDKEKWEMAEEKEEEVELWGFEDLEYAHDTSFSMSLPDSVGST 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00291 371 FunFam Putative receptor-like serine/threonine-protein kinase 26 133 - -
Viun9g00291 371 Gene3D Phosphorylase Kinase; domain 1 32 133 - -
Viun9g00291 371 ProSiteProfiles Protein kinase domain profile. 57 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00291 371 SUPERFAMILY Protein kinase-like (PK-like) 36 328 IPR011009 -
Viun9g00291 371 PANTHER OS08G0249100 PROTEIN 35 354 IPR046958 -
Viun9g00291 371 CDD STKc_IRAK 63 326 - -
Viun9g00291 371 FunFam Putative receptor-like serine/threonine-protein kinase 135 348 - -
Viun9g00291 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Viun9g00291 371 SMART serkin_6 57 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00291 371 Gene3D Transferase(Phosphotransferase) domain 1 135 351 - -
Viun9g00291 371 Pfam Protein tyrosine and serine/threonine kinase 61 321 IPR001245 GO:0004672|GO:0006468
Viun9g00291 371 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00291 Viun-Chr9 1952311 1955924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00291 34 339 Receptor kinase-like Gene Family AT1G60800 41.956 2.97e-69 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Viun9g00291 PK_Tyr_Ser-Thr 8.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00291 - - gmx:100804983 686.026