Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00280 ATGATTTTAGCCCTTATAAAAGTTCTAAAAAAACGGATTCCTCCTTTCACGCTCATGTCAAGGCGAGGTACTGCAGAAGAAAAAACCGCAAAATCCGATCCAATTTATCGTAATCGATTACTTAACATGTTGGTTAACCGTATTCTGAAACACGGAAAAAAATCATTGGCTTATCAAATTCTCTATCGAGCTATGAAAAAGATTCAACCAAAGATAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGCGTAGGCGGATCAACTCATCAAGTTCCCGTTGAAATAGGATCCGCACAAGGAAAAGCACTTGCCATTCGTTGGTTATTGGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGTAGTGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA 522 0.4061 MILALIKVLKKRIPPFTLMSRRGTAEEKTAKSDPIYRNRLLNMLVNRILKHGKKSLAYQILYRAMKKIQPKIETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPVEIGSAQGKALAIRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00280 173 NCBIfam 30S ribosomal protein S7 21 173 IPR005717 GO:0003735|GO:0006412|GO:0015935
Viun9g00280 173 CDD uS7_Chloroplast 28 172 - -
Viun9g00280 173 PANTHER RIBOSOMAL PROTEIN S7 20 167 IPR000235 GO:0006412
Viun9g00280 173 Pfam Ribosomal protein S7p/S5e 19 167 IPR023798 -
Viun9g00280 173 Hamap 30S ribosomal protein S7 [rpsG]. 19 173 IPR005717 GO:0003735|GO:0006412|GO:0015935
Viun9g00280 173 FunFam 30S ribosomal protein S7 19 173 - -
Viun9g00280 173 SUPERFAMILY Ribosomal protein S7 20 167 IPR036823 -
Viun9g00280 173 Gene3D Ribosomal protein S7 domain 19 173 IPR036823 -
Viun9g00280 173 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 5 173 IPR000235 GO:0006412
Viun9g00280 173 ProSitePatterns Ribosomal protein S7 signature. 38 64 IPR020606 GO:0003723|GO:0003735|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00280 Viun-Chr9 1904942 1907711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00280 39 167 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 36.029 2.89e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00280 K02992 - vvi:132254818 306.219