Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00268 ATGGAGGAGCGACGTAAAGAGGAGAACGAAAAAGGAGGGGAAGAAGGAAGGTACCGTGGTGTGAGAAGGAGGCCATGGGGTAAGTTTGGAGCAGAGATCAGAGACCCAACAAAACCTACGGGAAGACAATGGTTAGGGACATTTGACACAGCAGAAGCAGCAGCAAGAGCTTATGATCGAGCAGCCATAGAATTAAGGGGTGCTCTTGCAATCCTTAATTTCCCTGATGAGTACCATTCTCATCTCCCTTTCTTGTCATCATCATCATCATCATCTTCTTCTTCTTCTTCTACCAATGTCATCGGAAATTCTTCTACTGCACAAGGTGAAGTTATTGAGTTTGAGTATTTGGATGACAAGGTATTGGAAGACCTTCTTGAGTTAGAGGAGAAGAGAAAGAAGAAAGAGTAA 411 0.438 MEERRKEENEKGGEEGRYRGVRRRPWGKFGAEIRDPTKPTGRQWLGTFDTAEAAARAYDRAAIELRGALAILNFPDEYHSHLPFLSSSSSSSSSSSSTNVIGNSSTAQGEVIEFEYLDDKVLEDLLELEEKRKKKE 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00268 136 Coils Coil 118 136 - -
Viun9g00268 136 MobiDBLite consensus disorder prediction 83 104 - -
Viun9g00268 136 SUPERFAMILY DNA-binding domain 17 77 IPR016177 GO:0003677
Viun9g00268 136 FunFam Ethylene-responsive transcription factor 2 17 77 - -
Viun9g00268 136 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Viun9g00268 136 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Viun9g00268 136 ProSiteProfiles AP2/ERF domain profile. 17 75 IPR001471 GO:0003700|GO:0006355
Viun9g00268 136 PANTHER DNA-BINDING DOMAIN 8 131 IPR044808 GO:0003700|GO:0009873
Viun9g00268 136 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Viun9g00268 136 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
Viun9g00268 136 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Viun9g00268 136 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00268 Viun-Chr9 1741745 1742340 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00268 14 133 AP2-EREBP Transcription Factor Family AT3G23230 63.780 2.86e-43 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun9g00268 AP2 2.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00268 - - gmx:100807295 153.68