Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00267 ATGGAGAAAGAGAGATCAAAAGAGGAAGAAGTGAAGTATCGTGGTGTGAGAAAGAGACCGTGGGGTAAGTTTGGAGCAGAGATTAGAGATCCGACAAAACCTACGGGAAGACAATGGTTGGGAACGTTTGACACTGCCGAAGAAGCAGCCAGAGCTTATGATCGTGCTGCCATTGCTTTGAGGGGTGCTCTTGCGATCCTTAATTTTCCCGATGAGTACTATTCTCATCTTCCTTTTGTATTGTCGTCAGATTCTTCTGCTAAGGACAATGGAAGTTCTTTTGCCAGAAAGGAAGTTATTGAGTTCGAGTATTTGGATGACAAGGTGTTGGAGGATCTTCTTGAGATTGAAGAGAAGAGAAGGAAGGAATAA 372 0.4355 MEKERSKEEEVKYRGVRKRPWGKFGAEIRDPTKPTGRQWLGTFDTAEEAARAYDRAAIALRGALAILNFPDEYYSHLPFVLSSDSSAKDNGSSFARKEVIEFEYLDDKVLEDLLEIEEKRRKE 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00267 123 PANTHER DNA-BINDING DOMAIN 4 115 IPR044808 GO:0003700|GO:0009873
Viun9g00267 123 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Viun9g00267 123 ProSiteProfiles AP2/ERF domain profile. 12 70 IPR001471 GO:0003700|GO:0006355
Viun9g00267 123 SUPERFAMILY DNA-binding domain 12 72 IPR016177 GO:0003677
Viun9g00267 123 Gene3D AP2/ERF domain 11 71 IPR036955 GO:0003700|GO:0006355
Viun9g00267 123 SMART rav1_2 12 76 IPR001471 GO:0003700|GO:0006355
Viun9g00267 123 Pfam AP2 domain 12 62 IPR001471 GO:0003700|GO:0006355
Viun9g00267 123 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Viun9g00267 123 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Viun9g00267 123 FunFam Ethylene-responsive transcription factor 2 12 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00267 Viun-Chr9 1738993 1739603 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00267 8 121 AP2-EREBP Transcription Factor Family AT3G23230 57.600 5.39e-42 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun9g00267 AP2 6.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00267 - - vra:106779050 218.394