Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00265 ATGGAGGATTCACACAAGGATGAAGCAGAGAAAGAGAAAGGAGGTGAAGAAGTGAAGTACCGTGGTGTGAGAAAGAGGCCATGGGGTAAGTACGGAGCAGAGATCAGAGATCCAAGAAAACCTGCGGGAAGACAGTGGTTAGGAACATTTGACACAGCAGAAGAAGCAGCTAGAGCTTATGATCGTGCAGCACTTGAATTGAGGGGTGCACTTGCAGTCCTTAATTTTCCTGATTCATCTGCAAGTTCTTCGACTACAGCCATTGGAAGTTCTTGTTCTTCACAAGACAGGGAAGTTATCGAGTTCGAGTATTTGGATGATAAGGTGTTGGAAGATCTTCTTGAGTCAGAAGTGAAGAGAAGGAACCAATATTAA 375 0.4427 MEDSHKDEAEKEKGGEEVKYRGVRKRPWGKYGAEIRDPRKPAGRQWLGTFDTAEEAARAYDRAALELRGALAVLNFPDSSASSSTTAIGSSCSSQDREVIEFEYLDDKVLEDLLESEVKRRNQY 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00265 124 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Viun9g00265 124 ProSiteProfiles AP2/ERF domain profile. 19 77 IPR001471 GO:0003700|GO:0006355
Viun9g00265 124 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Viun9g00265 124 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Viun9g00265 124 SMART rav1_2 19 83 IPR001471 GO:0003700|GO:0006355
Viun9g00265 124 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Viun9g00265 124 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Viun9g00265 124 SUPERFAMILY DNA-binding domain 19 79 IPR016177 GO:0003677
Viun9g00265 124 CDD AP2 19 78 IPR001471 GO:0003700|GO:0006355
Viun9g00265 124 PANTHER DNA-BINDING DOMAIN 8 114 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00265 Viun-Chr9 1726921 1727353 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00265 16 121 AP2-EREBP Transcription Factor Family AT3G23230 55.645 7.11e-38 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun9g00265 AP2 6.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00265 - - gmx:100796977 166.777