Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00256 ATGGTATTCTCGACTGCTTTTCTCCATGAAGGTGGCCCCTTTTTATCTAGAAAAAGGCCAAGAGCATTAGATCTTGGACATCAAGATATAGATTTACATGCAGATGCAGAAAGGTGCATTAGTACTGGTGATGTTCCCTCTTCCAGTAACACTGACGATAAAGTTGATCCAGATTCTGGAATGGAGATGAGCTGTCCATCAAATATTAATAGTGGCTATGTTCCTGTGTGTTCTACCACAGGGAATATATCACACATGGACCAGAGTTTCTGTGGCTATGTGCAACAGCCTGCTCTAGTGAGTGGATGGATGTATGTGAATGAAAGTGGGCAAATGTGTGGTCCCTATATTAAGGAGCAGTTATACGAGGGCCTAACTACTGGTTTCTTGCCATCTGAGCTTCCTGTGTATCCAGTGATTAATGGCACAATAATGAACCCTGTACCACTGAATTACTTCAAGCAGTTCCCTGATCATGTTTCCACTGGGTTTGCATATCTGATTATGGGTATCTCAGGTGCAAGGATGCCTACAATGGCAGTATATGAACAAGATAGATCTTTCGAGGCTGCTCCTCTGGCTGGTAACCCAGATTCGGAATCTGTGTCACATTCGCATGTTAATTACTGCAGTAAGGAATCCAATCATTTAAATCCACACTCAGAGGCATTCGACAGTTTAATATCCTGTCAGATGTTACGTGAGGAATGCTGTTGGCTTTATGAGGATGAGAAGGGTATGAAGCATGGCCCCCATTCTATCAATGAATTGATTTCTTGGCACAGTCACGGATATATTAAAGATTCAGCAGTGATCTTTCATTCTGATAAGAAGTATGACACCTTTGTGCTATTGTCTGTTGTCAATGCATTAAAAGGAGATACCACTGGAACCATTTGTAGATCAGGTTCTAAAATTAATGAGGTTGACGATATGGTAGACTTGATTAGTGAAATATCTGAGAACATTTCTTCCCAATTGCACATGAGTATCATGAAAGCTGGTCGCAGAGTTGTGCTAGATGGAATTATTGGAGATATTATTGCTGAGTATGTTACAGAAAAGAAATGTAAGAGGCAAAAACTTGAATCAGTTGCCCATACTCCTGAAAACAAGATGGTCAGTAAAGGTTCTGCTATTCCCAGTGATCCTGCTATTACCCATATTTTTGATGATCAGGCTTGTCATGAAAGCTTGAGACTTCCCTCAGCCAGTTTTAAATCAGTTGGAAGCGTTGAGAATTTTTGGTGGTCATATGCTGTTGTTCGCAAGGTACTTCTTGATTATTGCATGCAAGTCATGTGGAATGCAGTGTTTTTTGATACAATAGCAGATTACTTATATTCTTGGAGGAAGAGGAAGATTTGGTCTCATCCTAAGCCTCAACCATCTACTAATGGATGTAAATATCATGCCGAGAAGATTGAATTAGAAGCTTTGGTTCCCAAGCCAGGTTTCCCTGAACGCAACGCTGATGGCTATAATCAGTTTGGAGTATTAACAACAAAAATAAATCATCCTAATTTATTTTTATCCCCTAGTAGGTTCGAAGGTGGAAACTTACTGAAAGGTCAAAATGTTTCTTCTCCTTATAATGACTCTAAAGATTTGTCATTCATTCTTGAAAGTGTGGAGAATGAGCTTCACTTCTCTTCAAAGGCATCTTTTGCTGATTACATTCGACATTTTGTTGAGAAGGAAGTGGAAAAATTAGTTCCTTTCCCAGAAGAAAACAAATTAAATGAGGTTGCTGTTAGTGACACTTGCTTTTCAGATATACTTGCTGACAAATTGTCTGCGAAGGAGATTCTAAATGAGAAGTCTCTGGATTCTGTTGAGGAAGGAAATTCATTTGGCAAGTCTGCATCTGGAAACCTTATGTCTGATATATTTTCAAAAGCATTTAAGGAGTTGTGTGGATACGGAGATGATGTGGTTGAAGAGGAGATTGATAACCTACCACCTGGAATTGAAAAGAAGTCTCAAACAGTTGTCCTACACCACGAATTGAAATTTCGACCTTCAAGGTCAGTTGAGTGTCATCCTAAGATCACAGAATATGTTGCAACTGCACTGTGCCGACAAAAACTGCATGATGGAGTTCTGGAAGAGTGGAAGTCGGTGTTTCTTGATTCTGTGCTCGATCAAGTTTTTATATCAAGTACCATAAAGAAACATTTTATGTCTGATGGGCAGGAGAAAGGAGAAACGTTCAATTCAAGCAAGAAAAATTTGAATGGTGCTACTTCTGGACTTGGAAGAGAGAAGGAAGGAGAAAAGAGTTCCGAAGTTCGTCTGGTGATTGGACAGAATACTTATTACCGCAAGAAGCTATCACGGAAGGAGTTAGTTTCCTCACAGACTGTAGCAGAAAAGGATTCTAGGCCAGGGAAGAAGCCCGCGGGCAAGTTGAGGAAACTTGTTTGTGGAGATGTTGGTGATGCTGTTGAGGTTGAAATAACTTCTGTTAAACATGGAAAGACAAAGAGGATTAAAGGGAAGAAGGATTCATGTTCTAAGGGCAGGTCTTCTGTCACCGTCAATGGTAGCTCACACAGTGATAAATTATCTTTAAAGAATAAAGCTGGTCAGAAAGTGTTGAAGTTTTCAGATAATGTCAAGGATGTTGTGAAATCCACTGTAAAGAAGCTTTCAGTGCCAACTGATAATAGTGTTCGTGAGAAGAAGGTTGTCAAGAGTGATGCCACTGTTAAAGAGAAAGCCTCAGGTCATTCCTCGAGAGAGATTCAAAGTGCAACGAATAAAGCATCAAAATCAAAAAGGAAACATCAAATGGATGGTACAGAATCTTCACATCCCACAAAGATTTTGAAAATTTCAAATGGTGATGCTTATCTGGATGCCAGTAAACAAGTTACTGTGGAAAGGACGAAGTCTGCTAAACCCAAACCATTGAATTTATGTCCTAAATCTGGTGGATGTGCTAGGACTTCTATTGATGGTTGGGAGTGGCATAGATGGTCTAGAAGTGCCAGTCCCGCATATAAAGCACGTGTTAGGGGCCTTCCGAGTGTCCAGAACAAGTGCATATATTCTGAAAATAATTTATCTCAGTTGCCAAATGGTAAGGGTCTTTCTGCAAGAACAAATAGAGTAAAATTACGTAACCTTCTTGCTGCTGCAGAGGGTGCGGATCTTCTGAAAGTGCCTCAATTGAAGGCACGGAAGAAGCGTTTACGTTTTCAAAGGAGCAAGATCCATGACTGGGGACTTGTTGCCTTGGAGCCAATTGAGGCAGAGGACTTTGTGATTGAGTACATTGGAGAGCTAATTCGTCCTCGGATATCAGATATACGGGAACGTCAATATGAGAGGATGGGAATTGGAAGCAGTTACCTTTTTAGACTTGATGATGGTTATGTGGTTGATGCCACAAAGAGAGGTGGAATTGCAAGATTTATTAATCACTCATGCCAGCCCAACTGCTATACAAAGGTTATATCTGTTGAGGGTCAAAAGAAGATTTTCATATATGCAAAACGACATATAAAGGCTGGTGAAGAAATAACATATAATTATAAGTTCCCCTTGGAGGAGAAAAAGATTCCTTGCAACTGTGGTTCCAGAAAGTGTCGTGGATCATTGAATTAG 3612 0.4012 MVFSTAFLHEGGPFLSRKRPRALDLGHQDIDLHADAERCISTGDVPSSSNTDDKVDPDSGMEMSCPSNINSGYVPVCSTTGNISHMDQSFCGYVQQPALVSGWMYVNESGQMCGPYIKEQLYEGLTTGFLPSELPVYPVINGTIMNPVPLNYFKQFPDHVSTGFAYLIMGISGARMPTMAVYEQDRSFEAAPLAGNPDSESVSHSHVNYCSKESNHLNPHSEAFDSLISCQMLREECCWLYEDEKGMKHGPHSINELISWHSHGYIKDSAVIFHSDKKYDTFVLLSVVNALKGDTTGTICRSGSKINEVDDMVDLISEISENISSQLHMSIMKAGRRVVLDGIIGDIIAEYVTEKKCKRQKLESVAHTPENKMVSKGSAIPSDPAITHIFDDQACHESLRLPSASFKSVGSVENFWWSYAVVRKVLLDYCMQVMWNAVFFDTIADYLYSWRKRKIWSHPKPQPSTNGCKYHAEKIELEALVPKPGFPERNADGYNQFGVLTTKINHPNLFLSPSRFEGGNLLKGQNVSSPYNDSKDLSFILESVENELHFSSKASFADYIRHFVEKEVEKLVPFPEENKLNEVAVSDTCFSDILADKLSAKEILNEKSLDSVEEGNSFGKSASGNLMSDIFSKAFKELCGYGDDVVEEEIDNLPPGIEKKSQTVVLHHELKFRPSRSVECHPKITEYVATALCRQKLHDGVLEEWKSVFLDSVLDQVFISSTIKKHFMSDGQEKGETFNSSKKNLNGATSGLGREKEGEKSSEVRLVIGQNTYYRKKLSRKELVSSQTVAEKDSRPGKKPAGKLRKLVCGDVGDAVEVEITSVKHGKTKRIKGKKDSCSKGRSSVTVNGSSHSDKLSLKNKAGQKVLKFSDNVKDVVKSTVKKLSVPTDNSVREKKVVKSDATVKEKASGHSSREIQSATNKASKSKRKHQMDGTESSHPTKILKISNGDAYLDASKQVTVERTKSAKPKPLNLCPKSGGCARTSIDGWEWHRWSRSASPAYKARVRGLPSVQNKCIYSENNLSQLPNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRPRISDIRERQYERMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCQPNCYTKVISVEGQKKIFIYAKRHIKAGEEITYNYKFPLEEKKIPCNCGSRKCRGSLN 1203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00256 1203 SUPERFAMILY SET domain 1060 1200 IPR046341 -
Viun9g00256 1203 MobiDBLite consensus disorder prediction 731 761 - -
Viun9g00256 1203 ProSiteProfiles Post-SET domain profile. 1187 1203 IPR003616 -
Viun9g00256 1203 MobiDBLite consensus disorder prediction 897 947 - -
Viun9g00256 1203 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 41 1203 IPR044570 GO:0042800|GO:0051568
Viun9g00256 1203 ProSiteProfiles GYF domain profile. 236 286 IPR003169 GO:0005515
Viun9g00256 1203 SUPERFAMILY GYF domain 233 286 IPR035445 -
Viun9g00256 1203 MobiDBLite consensus disorder prediction 40 60 - -
Viun9g00256 1203 SMART set_7 1064 1187 IPR001214 GO:0005515
Viun9g00256 1203 ProSiteProfiles SET domain profile. 1064 1181 IPR001214 GO:0005515
Viun9g00256 1203 SMART PostSET_3 1187 1203 IPR003616 -
Viun9g00256 1203 Gene3D - 92 163 IPR035445 -
Viun9g00256 1203 Gene3D - 228 317 IPR035445 -
Viun9g00256 1203 MobiDBLite consensus disorder prediction 840 857 - -
Viun9g00256 1203 MobiDBLite consensus disorder prediction 733 748 - -
Viun9g00256 1203 Pfam SET domain 1076 1180 IPR001214 GO:0005515
Viun9g00256 1203 CDD SET_SETD1 1052 1199 IPR037841 GO:0042800|GO:0048188
Viun9g00256 1203 MobiDBLite consensus disorder prediction 831 859 - -
Viun9g00256 1203 Gene3D SET domain 873 1203 IPR046341 -
Viun9g00256 1203 MobiDBLite consensus disorder prediction 897 912 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00256 Viun-Chr9 1642591 1657857 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00256 1063 1203 C2H2 Transcription Factor Family AT2G23740 36.810 1.45e-18 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Viun9g00256 SET 1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00256 - - gmx:100805708 1914.43