Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00244 ATGGCTGAAACTGAGTCTGAGAGTCCCTTAGGTGCACCCATTATGAGCCCTATCAGAACAGCAAAACCATGCACCCCATCAGAGCACAGTATCAGTTTGATGGTTATTTTGGCAGCAATAGTGTGTGCCTTGCTTTGTGCTCTTGGTCTGAACACAATGTTGCTATGTGTGTTCCAATGTGCCAATCGTGTTCTCACCGAACCCTTTCAATGGATTGCCTCTAGGAGACTCAATTCTGGCCTGAAGAAGAGAGAAGTGGTGGCTCTGCCAACCTCAACCTACACTCATTCTGGTGGCTCTCCGTGTAACTGTGCCATTTGTTTATCAGAGTTTTCCGATGGGGACAGTATAAGGTTTCTCCCAAACTGCAATCACCGTTTTCATGTTCAGTGCATTGACAAGTGGCTGCTTTCTCACTCTTCTTGCCCTACTTGTAGGAACCTCCTCAAGTCTAGTCATTCACTACACTCCTTGCATGTTCTAGTATCATAG 492 0.4614 MAETESESPLGAPIMSPIRTAKPCTPSEHSISLMVILAAIVCALLCALGLNTMLLCVFQCANRVLTEPFQWIASRRLNSGLKKREVVALPTSTYTHSGGSPCNCAICLSEFSDGDSIRFLPNCNHRFHVQCIDKWLLSHSSCPTCRNLLKSSHSLHSLHVLVS 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00244 163 Pfam Ring finger domain 103 146 IPR001841 -
Viun9g00244 163 CDD RING-H2_EL5-like 104 146 - -
Viun9g00244 163 SUPERFAMILY RING/U-box 103 153 - -
Viun9g00244 163 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Viun9g00244 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 152 IPR013083 -
Viun9g00244 163 SMART ring_2 104 145 IPR001841 -
Viun9g00244 163 PANTHER RING-H2 FINGER PROTEIN ATL78 30 151 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00244 Viun-Chr9 1565900 1567418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00244 21 149 C3H Transcription Factor Family AT2G17450 43.662 3.06e-31 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00244 - - gmx:100803003 242.276