Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00220 ATGAGAGAAGCATCAATGAGGATTTCAACCCTTGGTTTTGTGCTCCTCCTGTGTTTTTCTTCTGCACTCCTTTGCCGTGGTAATGAGAGCACCATGAGAGTGCTTTTGGAGGTGAAATCATCGTTCACTGAAGACCCAGAAAATGTTTTAAGGGATTGGTCAGAGAACAACACCGATTACTGTAGCTGGAGAGGGGTGTCATGTGGTTCAAAGAAGCTCAATTCTTTGGATGCTGATGACGACTCGGTGCAAGTGGTGGGACTCAACCTGTCCGATTCGTCACTCGGTGGGTCGATATCACCGTCACTCGGTGGTTTGCAAAACCTGCTGCACCTTGATCTCTCTTTAAACCGCCTCGAGGGTCCCATTCCATCGGCCCTCTCGAACCTCACTTCGTTGGAATCTCTCCTTCTCCACTCCAACCAACTCAACGGTCAAATCCCCACCGAGTTAGACTCGCTCATGCGTCTCCGAGTTTTGCGAATCGGTAACAACCAACTCAGTGGCCCGATTCCTGAGACGCTTGGGTATATGCCCAGCCTCGAGTACCTTGGTTTGGCCTCATGCAGACTCAGCGGTCAGATCCCGGCCCAGCTTGGTCGACTCAGTGAGTTGCAATATTTGTCTCTGCAGGAAAACGACTTGACTGGGCCGATTCCGTACGAAGTGGGGTACTGCTGGAGCCTTCAGGTCTTCAGCGCCGCCGGGAACAACCTCAATGGCTCGGTTCCGAGTGAACTGAGTCTACTCAGGAAACTTCAAATTCTGAACCTCGCCAACAACAGCCTAACCGGGTCTATTCCGAGTCAACTCGGGCAGCTGAGTCAGCTTACATATCTGAATTTAATGGGTAACCAACTCGAGGGTCGCATTCCACCGTCTCTGGCTCAATTGGGTAACCTTCAAAATCTGGACTTGACAAATAATACGCTTACTGGGGAAATTCCAGAGGAGTTAGGGAACATGGGTCAGTTACAATATCTGGTTCTCTCTGGGAACAAACTCAATGGAACCATTCCAAGAACCATATGTTCCAATGCGACAAGTTTGGAGACCTTGCTGATGGGAGATAATGGACTTCATGGTGAGATACCAGCTGAGTTGGGTGAGTGCCAATCCCTGAAACAACTTGATTTATCAGGCAATGATCTCAACGGGTCAATACCTATTGAGGTTTATGGGTTGACGGGGCTAACCGATCTCTTACTTCACAACAACACTTTGGATGGTTCAATCTCTCCCTTCATAGGAAACCTCACTAACATGCAGAGTCTTGCACTGTTTCATAACAACTTGCGGGGTGATCTTCCCAGAGAGATTGGGACGCTTGGGAAAATGGAGATAATGTATCTTTATGATAATCAGTTATCAGGGAAGATTCCTCTCGAGATCGGTAACTGTTCAAGCTTGCAATGGGTTGATTTTTTTGGAAACCATTTCAGTGGTGAAATTCCCTTCACTATAGGGAGGCTGAAAGATTTGAACTTTTTGCACCTTAGGCAGAATGAACTTGTGGGTGTGATTCCCCCAACACTTGGGAACTGTCATAAACTCACTGTGCTGGATTTGGCAGATAATCGCCTCTCAGGTGGCATTCCAGCAACATTCGGATTCCTCAGAAACTTGGAGCAGTTCATTCTCTACAACAATTCTCTTGAAGGTAGTCTTCCTCACCAACTTGTAAATCTAGCAAACCTCACCAGAGTGAATCTTTCAAATAACAGACTGAATGGTAGTTTGGCTCCATTGTGTAGCTCTAGTTCCTTTCTTTCTTTTGATGTCACAGATAATGAATTTGACGGTGAAATACCCTTTGTCCTGGGAAATTCACCTTCCCTTGACAGGTTGAGATTAGGTAACAACAAGTTTTCAGGTGAAATTCCAAGGACATTGGGAAAAATCACCGCATTGTCATTGTTAGACGTCTCAGGAAATTCACTCACGGGTGGAATACCAGATGAGCTTTCTTTGTGCAATAACCTGACTCACGTTGATTTGAACAACAATCTTCTAACTGGACACATACCGCTATGGCTTGGAAATTTGCCTCAGTTGGGAGAGGTTAAGCTCTCATTCAATCAATTTTCTGGGTCTATTCCACTAGGCCTACTCAAACAACCCAAGTTGATTGTTCTTTCCTTGAATAACAATTCTCTCAGTGGAACTCTCCCAGGTGATATCGGCGATCTTGTATCTCTTAACACCCTCAGGCTGGACCATAATAACCTCTCTGGACCAATCCCTCAAACAATAGGTAAATTGAACAATCTTTATGAGCTGCGGCTATCCAGGAATGGCTTTAGTGGGGAAATACCAATTGAGATTGGAAGTCTTCAAAATGTCCAAAGCATTTTGGACTTAAGTTACAATAATCTCTCTGGTCATATCCCTTCTTCAATTGGCATGCTGTCAAAATTGGAAGTACTTAATCTTTCTCACAATGCACTCACTGGAGAAGTGCCTTCAGCAGTTGGTGAATTGACCAGTTTGCAGAAGCTTGACATCTCTTACAATAACCTTCAAGGAGCATTGGATAAGCAATTCTCTCGCTGGCCTCATGAATCATTTGAAGGGAACATTCATCTTTGTGGAGCCTCCCTTGCAAGATGCATAGGTGGTGATAAGCGATCAGTCTTCAGCAATACATCAGTGATTATAGTCTCTACACTTTCAACTTTAGCTGTAATTGCTTTACTTGTACTTGTAGTGATCGTCTTGTTTAAAAGCAAGCAAGAATTTTTCAGGAGAGGCAGTGAACTGAGTTTTGTTTTCTCCTCTTCTTCACGAGCACATAAACGATCGTTGATCCCTCTGACTGTGCCTGCAAAGAGAGATTTCAGGTGGCAAGACATCATGTATTCCACAAACAATCTAAGTGATGAGTTTGTAGTTGGTTGTGGAGGCTCTGGGACAGTGTACAGAGTTGAATTGCCCTCTGGAGAGATCGTGGCTGTGAAGAAGATTTCAGGAAAAGATGATTATCTGTTGAACAAAAGCTTTATAAGAGAAATCAAAACCTTAGGGAGGATCAAACATAGGCATCTGGTAAAACTGATGGGTTGTTGTAGCAACAGAATGAAAGGAACAGGTTGGAATCTGTTGATATATGAGTACATGGAGAATGGGAGTGTTTGGGATTGGTTACATGGGGTGCCCCTCAAAGCAAAGAGGATCCTTGATTGGGACACAAGGTTCAAAATTGCAATGGGATTAGCTCACGGAGTGGAGTACCTCCATCACGATTGTGTGCCAAAGATCATTCACAGGGACATCAAATCCAGCAACATTTTACTAGATTCCAACATGGAGGCACACCTGGGAGACTTTGGACTCGCAAAATCAATCATTGAGAATCCAGAATCTAATGCAGAATCTAATTCTTGCTTTGCTGGATCTTATGGATACATAGCCCCAGAGTATGCATACACACTGAAGGCCACAGAGAAAACTGATGTGTACAGCATGGGAGTTGTGTTTATGGAACTTGTTACTGGTAAAATGCCAACAGATGCAGGTTTCGGAGCAGAGATGGACATGGTGAGATGGGTGAAGATGAACCTTGAGAAGGAAGGCACTGCGGTTGAAGAAGTGATAGATCCTCAGCTGAAACCCCTTTTGCCTGGTGAAGAGTTTGCTGCATTGCAGGTGCTGGAGATAGCCTTACACTGCACAAAAACTGCACCACAAGAGAGGCCAACATCAAGGCAAGTATGCCATCATCTCCAGCACGTATCCAACAACAAAATTGTGGATTTTGATAAGAAGAATCTGGATCATTACTGA 3783 0.4454 MREASMRISTLGFVLLLCFSSALLCRGNESTMRVLLEVKSSFTEDPENVLRDWSENNTDYCSWRGVSCGSKKLNSLDADDDSVQVVGLNLSDSSLGGSISPSLGGLQNLLHLDLSLNRLEGPIPSALSNLTSLESLLLHSNQLNGQIPTELDSLMRLRVLRIGNNQLSGPIPETLGYMPSLEYLGLASCRLSGQIPAQLGRLSELQYLSLQENDLTGPIPYEVGYCWSLQVFSAAGNNLNGSVPSELSLLRKLQILNLANNSLTGSIPSQLGQLSQLTYLNLMGNQLEGRIPPSLAQLGNLQNLDLTNNTLTGEIPEELGNMGQLQYLVLSGNKLNGTIPRTICSNATSLETLLMGDNGLHGEIPAELGECQSLKQLDLSGNDLNGSIPIEVYGLTGLTDLLLHNNTLDGSISPFIGNLTNMQSLALFHNNLRGDLPREIGTLGKMEIMYLYDNQLSGKIPLEIGNCSSLQWVDFFGNHFSGEIPFTIGRLKDLNFLHLRQNELVGVIPPTLGNCHKLTVLDLADNRLSGGIPATFGFLRNLEQFILYNNSLEGSLPHQLVNLANLTRVNLSNNRLNGSLAPLCSSSSFLSFDVTDNEFDGEIPFVLGNSPSLDRLRLGNNKFSGEIPRTLGKITALSLLDVSGNSLTGGIPDELSLCNNLTHVDLNNNLLTGHIPLWLGNLPQLGEVKLSFNQFSGSIPLGLLKQPKLIVLSLNNNSLSGTLPGDIGDLVSLNTLRLDHNNLSGPIPQTIGKLNNLYELRLSRNGFSGEIPIEIGSLQNVQSILDLSYNNLSGHIPSSIGMLSKLEVLNLSHNALTGEVPSAVGELTSLQKLDISYNNLQGALDKQFSRWPHESFEGNIHLCGASLARCIGGDKRSVFSNTSVIIVSTLSTLAVIALLVLVVIVLFKSKQEFFRRGSELSFVFSSSSRAHKRSLIPLTVPAKRDFRWQDIMYSTNNLSDEFVVGCGGSGTVYRVELPSGEIVAVKKISGKDDYLLNKSFIREIKTLGRIKHRHLVKLMGCCSNRMKGTGWNLLIYEYMENGSVWDWLHGVPLKAKRILDWDTRFKIAMGLAHGVEYLHHDCVPKIIHRDIKSSNILLDSNMEAHLGDFGLAKSIIENPESNAESNSCFAGSYGYIAPEYAYTLKATEKTDVYSMGVVFMELVTGKMPTDAGFGAEMDMVRWVKMNLEKEGTAVEEVIDPQLKPLLPGEEFAALQVLEIALHCTKTAPQERPTSRQVCHHLQHVSNNKIVDFDKKNLDHY 1260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00220 1260 PRINTS Leucine-rich repeat signature 374 387 - -
Viun9g00220 1260 PRINTS Leucine-rich repeat signature 803 816 - -
Viun9g00220 1260 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 292 390 - -
Viun9g00220 1260 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 485 581 - -
Viun9g00220 1260 SUPERFAMILY RNI-like 87 409 - -
Viun9g00220 1260 Pfam Leucine rich repeat 517 576 IPR001611 GO:0005515
Viun9g00220 1260 Pfam Leucine rich repeat 784 840 IPR001611 GO:0005515
Viun9g00220 1260 Gene3D Ribonuclease Inhibitor 196 293 IPR032675 -
Viun9g00220 1260 SMART LRR_typ_2 563 587 IPR003591 -
Viun9g00220 1260 SMART LRR_typ_2 130 154 IPR003591 -
Viun9g00220 1260 SMART LRR_typ_2 730 754 IPR003591 -
Viun9g00220 1260 SMART LRR_typ_2 322 346 IPR003591 -
Viun9g00220 1260 SMART LRR_typ_2 178 202 IPR003591 -
Viun9g00220 1260 SMART LRR_typ_2 298 321 IPR003591 -
Viun9g00220 1260 SMART LRR_typ_2 250 274 IPR003591 -
Viun9g00220 1260 SMART LRR_typ_2 106 129 IPR003591 -
Viun9g00220 1260 SMART LRR_typ_2 491 515 IPR003591 -
Viun9g00220 1260 SMART LRR_typ_2 682 706 IPR003591 -
Viun9g00220 1260 SMART LRR_typ_2 419 443 IPR003591 -
Viun9g00220 1260 SMART LRR_typ_2 803 826 IPR003591 -
Viun9g00220 1260 SMART LRR_typ_2 827 858 IPR003591 -
Viun9g00220 1260 ProSitePatterns Protein kinases ATP-binding region signature. 964 987 IPR017441 GO:0005524
Viun9g00220 1260 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1086 1098 IPR008271 GO:0004672|GO:0006468
Viun9g00220 1260 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 920 1038 - -
Viun9g00220 1260 Pfam Leucine rich repeat N-terminal domain 34 68 IPR013210 -
Viun9g00220 1260 SUPERFAMILY L domain-like 651 852 - -
Viun9g00220 1260 Gene3D Ribonuclease Inhibitor 294 534 IPR032675 -
Viun9g00220 1260 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 28 197 - -
Viun9g00220 1260 Gene3D Ribonuclease Inhibitor 535 873 IPR032675 -
Viun9g00220 1260 ProSiteProfiles Protein kinase domain profile. 958 1243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00220 1260 Pfam Protein kinase domain 963 1240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00220 1260 SUPERFAMILY RNI-like 355 718 - -
Viun9g00220 1260 SUPERFAMILY Protein kinase-like (PK-like) 933 1242 IPR011009 -
Viun9g00220 1260 Gene3D Transferase(Phosphotransferase) domain 1 1039 1258 - -
Viun9g00220 1260 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 198 291 - -
Viun9g00220 1260 FunFam Leucine-rich repeat receptor-like protein kinase 1039 1258 - -
Viun9g00220 1260 PANTHER UNNAMED PRODUCT 11 485 - -
Viun9g00220 1260 Gene3D Phosphorylase Kinase; domain 1 919 1038 - -
Viun9g00220 1260 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 582 873 - -
Viun9g00220 1260 SMART serkin_6 958 1243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00220 1260 FunFam Uncharacterized protein 391 484 - -
Viun9g00220 1260 Gene3D Ribonuclease Inhibitor 28 195 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00220 Viun-Chr9 1352359 1357225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00220 189 797 Receptor kinase-like Gene Family AT1G17750 34.488 1.74e-89 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun9g00220 Pkinase 4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00220 - - gmx:100797153 1954.49