Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun9g00212 | ATGGAAGCGTTCAGTGGGTTCGCAGTGGACGAGAAAGCCGTTACGGTTGAGAACGCTTTTTTGGATTTTCTCAAAAGTTTCAAATCTAGCCAACGGAACGAGCTTCAATACGAAGCGGAGATTGAAGTGATGAGAGTCAACGAATCCAACACTATGTTCATCGATTTCTCACATGTCGTCAGATTCAGCGACCTCCTCCAGCAGACTATCTCTGATGAATATTTGAGATATGAACCTTATTTGAGGAATGCTTGCAAGAGATTTGTTATGGAACTCAAGCCGTCAGTTGTATCCGACGATGGCCCTAACAAGGACATCAATGTTGCTTTTTACAATATTGCCGTTATTAAGCGGTTAAGGGAATTGGGTACATCGGAAATTGGGAGACTTGTATCCGTTACAGGAGTGGTGACGAGGACAAGTGAGGTTCGACCTGAACTTCTCCAGGGGACTTTCAAGTGCTTGGAATGCGGTGGTGTTATAAAGAATGTTGAACAGCAATTCAAGTATACCGAGCCAACAATCTGTACAAATGCCACCTGTAACAATCGAACAAGGTGGGTATTGCTTCGGCAGGAGAGCAAATTTGCTGATTGGCAGAGGGTCAGGATGCAGGAGACATCCAAAGAGATACCTGCGGGCTCTCTTCCTAGGTCATTGGATGTTATTCTTCGTCATGAGATCGTGGAACAGGCCAGGGCTGGTGACACGGTGATTTTCACAGGTACAGTAGTTGTCATACCTGACATAATGGCATTGGCATCTCCTGGAGAGAGATCAGAGTGTCGTCGTGAACGCAAGGGTCCTACCGCTGGAAATGAAGGTGTCAGTGGCCTTAAGGCCCTGGGAGTCAGAGACCTCTCCTATCGTCTAGCGTTTATTGCTAACTCTGTTCAGATTTGTGATGGAAGAAGAGAAATAGACATCAGGAATAGAAAGAAGGATGTCGATGAAGATGACCAACAGTTTACTACACAGGAACTGGATGAAATTCAACGAATGAGGAATACTCCTGATTTTTTCAACAAACTAGTTGAAAGCGTTGCTCCAACTGTGTTTGGTCATCCAGATATAAAGAGAGCTATCCTTCTTATGCTCATGAGTGGTGTTCACAAATTTACTCATGAAGGCATCAACCTCAGAGGAGACATAAATGTTTGCGTTGTTGGAGATCCCAGCTGTGCAAAATCTCAATTTCTTAAGTATACTTCAGGCATAGTGCCAAGATCTGTATATACATCTGGGAAATCCTCATCTGCTGCTGGCTTGACTGCAACTGTTGCGAAGGAACCAGAAACTGGGGAGTTTTGTATTGAGGCTGGTGCTTTGATGCTTGCTGACAATGGCATCTGCTGCATTGATGAATTTGACAAGATGGACATCAAAGATCAGGTTGCCATTCACGAGGCCATGGAACAACAGACTATTAGTATCACAAAAGCAGGAATACAAGCAACACTTAATGCTCGTACGTCCATTCTTGCCGCTGCCAATCCTGCAGGGGGACGCTATGATAAATCTAAACCACTTAAGTACAATGTGGCCCTTCCACCGGCTATACTTTCGAGGTTCGATCTCGTATATGTTATGATAGATGATCCAGATGATCAGACAGATTATCACATTGCACATCATATTGTGAGAGTTCATCAAAAGCGAGAAGCTGCTCTTGCTCCAGCATTCACTACAGCAGAACTGAAGCGTTATATAGCATATGCAAAAACTCTTAAACCAAAGCTCACGTCAGATGCCAGAAAACTACTGGTAGAATCTTATGTTGCGCTTCGTAGAGGTGATACAAATCCAGGGAGTAGGGTTGCTTATCGTATGACAGTTAGGCAATTGGAAGCATTAATCAGGCTGTCAGAGGCCATCGCACGGTGTCATTTGGACAATCAGGTACAACCTCGCCATGTTCGTCTAGCAGTTAAACTGCTGAAAACTTCTATTATAAGTGTGGAGTCGAGTGAGATCGATCTGTCTGAGTTTCAAGAAGAAAATCAGAATGCCGGGGCAGCTGGTGGTGGTGGAAATGATAATAATGGAGATGCTAATGACGCAAGAGGTGATGGAAATGATAATAGAGATGCTAATGATGGAAATCAAGCAGATGGATCTAACTCCCAGGGAACGAGACAAGCTGACCGAAAAGATGGAAATCCAGCGGATGGGTCTAAACCCCAAGCGAAAAAACTCGTTATAAGTGATGAATATTTTCAAAGAGTAACCAGCGCCCTTATCATGCGTCTTAGGCAGCATGAAGAGGCTGCTATGCAAGGAAATGGTTTGGCTGGAATGAGACAAAAAGATTTGATTCAATGGTACGTAGACCAACAAAACGAGAGAAATAACTACAGTTCGATGGAGGAAGTGACAGCTGAAATTTCAAAAATTAAAGCTATTATAGAGAGTTTAATTCGCAGAGAAGGTCATTTGATAGTGGTAGATGATGGGCAAGAGGCGGCTGCCGAAGGAGGAGGCGCACCTAGAAACAACCGAATCTTAGCGGTGGCTCCCAATTATGTCGTGGATTGA | 2535 | 0.4398 | MEAFSGFAVDEKAVTVENAFLDFLKSFKSSQRNELQYEAEIEVMRVNESNTMFIDFSHVVRFSDLLQQTISDEYLRYEPYLRNACKRFVMELKPSVVSDDGPNKDINVAFYNIAVIKRLRELGTSEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKNVEQQFKYTEPTICTNATCNNRTRWVLLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDTVIFTGTVVVIPDIMALASPGERSECRRERKGPTAGNEGVSGLKALGVRDLSYRLAFIANSVQICDGRREIDIRNRKKDVDEDDQQFTTQELDEIQRMRNTPDFFNKLVESVAPTVFGHPDIKRAILLMLMSGVHKFTHEGINLRGDINVCVVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIKDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKREAALAPAFTTAELKRYIAYAKTLKPKLTSDARKLLVESYVALRRGDTNPGSRVAYRMTVRQLEALIRLSEAIARCHLDNQVQPRHVRLAVKLLKTSIISVESSEIDLSEFQEENQNAGAAGGGGNDNNGDANDARGDGNDNRDANDGNQADGSNSQGTRQADRKDGNPADGSKPQAKKLVISDEYFQRVTSALIMRLRQHEEAAMQGNGLAGMRQKDLIQWYVDQQNERNNYSSMEEVTAEISKIKAIIESLIRREGHLIVVDDGQEAAAEGGGAPRNNRILAVAPNYVVD | 844 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun9g00212 | 844 | Pfam | MCM6 C-terminal winged-helix domain | 730 | 843 | IPR041024 | - | |
| Viun9g00212 | 844 | Pfam | MCM OB domain | 119 | 247 | IPR033762 | - | |
| Viun9g00212 | 844 | FunFam | DNA helicase | 325 | 655 | - | - | |
| Viun9g00212 | 844 | Coils | Coil | 788 | 808 | - | - | |
| Viun9g00212 | 844 | Gene3D | - | 8 | 115 | - | - | |
| Viun9g00212 | 844 | SMART | mcm | 115 | 651 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Viun9g00212 | 844 | CDD | MCM6 | 343 | 649 | - | - | |
| Viun9g00212 | 844 | Gene3D | - | 119 | 247 | IPR012340 | - | |
| Viun9g00212 | 844 | Pfam | MCM AAA-lid domain | 565 | 650 | IPR041562 | - | |
| Viun9g00212 | 844 | ProSitePatterns | MCM family signature. | 449 | 457 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Viun9g00212 | 844 | Pfam | MCM N-terminal domain | 18 | 112 | IPR027925 | - | |
| Viun9g00212 | 844 | SUPERFAMILY | Nucleic acid-binding proteins | 20 | 249 | IPR012340 | - | |
| Viun9g00212 | 844 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 219 | 230 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Viun9g00212 | 844 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 74 | 86 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Viun9g00212 | 844 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 116 | 128 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Viun9g00212 | 844 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 275 | 296 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Viun9g00212 | 844 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 166 | 183 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Viun9g00212 | 844 | MobiDBLite | consensus disorder prediction | 698 | 715 | - | - | |
| Viun9g00212 | 844 | MobiDBLite | consensus disorder prediction | 667 | 731 | - | - | |
| Viun9g00212 | 844 | FunFam | DNA helicase | 728 | 844 | - | - | |
| Viun9g00212 | 844 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 520 | 528 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Viun9g00212 | 844 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 493 | 505 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Viun9g00212 | 844 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 381 | 396 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Viun9g00212 | 844 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 469 | 482 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Viun9g00212 | 844 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 441 | 455 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Viun9g00212 | 844 | Gene3D | - | 728 | 844 | - | - | |
| Viun9g00212 | 844 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 10 | 795 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Viun9g00212 | 844 | Gene3D | - | 318 | 655 | IPR027417 | - | |
| Viun9g00212 | 844 | Pfam | MCM P-loop domain | 328 | 550 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Viun9g00212 | 844 | FunFam | DNA helicase | 146 | 197 | - | - | |
| Viun9g00212 | 844 | Gene3D | - | 146 | 197 | - | - | |
| Viun9g00212 | 844 | ProSiteProfiles | MCM family domain profile. | 340 | 546 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Viun9g00212 | 844 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 350 | 651 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun9g00212 | Viun-Chr9 | 1276735 | 1282386 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun9g00212 | 1 | 844 | Core DNA Replication Machinery Family | AT5G44635 | 71.169 | 0.0 | 1262 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun9g00212 | K02542 | - | gmx:100787290 | 1430.23 |